Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq86 156 4e-33
>seq86
Length=611229
Score = 156 bits (172), Expect = 4e-33
Identities = 231/321 (72%), Gaps = 10/321 (3%)
Strand=Plus/Plus
Query 37041 ATGTTGAATAGAACCATTATGTAACA-CAATTGTATTCTTTATGTCATTATTCCACATAT 37099
|| ||||| |||||||||| || | |||||| || ||| |||| | || ||| ||
Sbjct 223770 ATCTTGAACGGAACCATTATTTACAATCAATTG-ATCCTTCATGTTGTCATCCCA--TAG 223826
Query 37100 TTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAA 37157
| | | || | | |||||||| || || |||| ||||| ||||| ||||| || ||
Sbjct 223827 TCCCAATTCAACCAAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAA 223886
Query 37158 TACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATAT 37217
||||||| | || ||||| ||||||||||||| || ||||| || | ||| ||
Sbjct 223887 AACTCTTCGAGAGTAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAAT 223946
Query 37218 TTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGT 37277
||| | ||| || ||||| ||||| ||||| || ||||| ||| | | || |||
Sbjct 223947 TTGTGCTGTGGAAGCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTG 224006
Query 37278 ATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCAC 37335
| | ||| | | ||||| | | ||||||||| | |||||||||| | | || ||||
Sbjct 224007 ACTGATTTTTTCTTTTAATGCTGCCCAATCCCAGAGATCTGTTGGGGTAACATT--CCAC 224064
Query 37336 ATATCATATTGTAGAATACCT 37356
|||||||||||||| ||||||
Sbjct 224065 ATATCATATTGTAGGATACCT 224085
Score = 111 bits (122), Expect = 1e-19
Identities = 174/249 (70%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976
|||||||| | | || | | | ||| || | ||||| ||||| |||||||||||
Sbjct 232734 TTCGTATTTTCTGTAGAGTGCATCAAATTCGTCACCCCAGCAATCGCTCAATCCTGGACA 232793
Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036
| | |||||||| | | ||| | ||||| |||||| ||| ||||||| |||
Sbjct 232794 TCTGTTCGGACACATCAAACTCCAAGTTCCATCTGATTCTACTCGTCTCATAAATTCATC 232853
Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096
|||| ||| | ||| |||||||||| | |||| | ||||| || || ||||||
Sbjct 232854 GGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTTCCCGTATTCTT 232913
Query 38097 TCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156
| |||| || ||| || || ||||| | ||||||||||| | |||||| | | ||
Sbjct 232914 TTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAAATAGCAAAAGC 232973
Query 38157 TCCTGGTCT 38165
||| |||||
Sbjct 232974 TCCGGGTCT 232982
Score = 96.9 bits (106), Expect = 3e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468
|||||| |||| |||||| || ||||| ||||| |||| ||||||| || | |
Sbjct 234735 TGGAGTAGCGGCACCAAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAA 234794
Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528
|||||||||||| || | |||||||| |||| || || || | ||||| | |||
Sbjct 234795 ATTATATGTTTCAATAGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCAT 234854
Query 38529 TAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTC 38588
| ||||||||| |||||||| | | |||| ||| ||| | || ||| ||| ||||
Sbjct 234855 CAACATATGTTGAGGTCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTC 234914
Query 38589 TAATGT 38594
|| ||
Sbjct 234915 CAAAGT 234920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468389601312400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |