Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq86 150 2e-31 >seq86 Length=611229 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213 ||| |||| | ||||| ||||||| |||||||||||||| ||||| ||||| |||| | Sbjct 223840 AAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAG 223899 Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 |||||||| ||||| ||||| | || ||||| ||||| |||||||| || || || Sbjct 223900 TAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAA 223959 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333 ||||| ||||||||||||| | | | ||| | || |||| | |||||||| ||| Sbjct 223960 GCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCT 224019 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATC 65359 |||| | | |||||| ||| ||||| Sbjct 224020 TTTAATGCTGCCCAATCCCAGAGATC 224045 Score = 132 bits (146), Expect = 6e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 66467 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 66526 |||||| || |||||||| || || || |||||||||| |||| ||| || || ||||| Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809 Query 66527 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 66586 ||||||||||||||| ||| ||||| || | || ||||| ||||| || ||||| Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869 Query 66587 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 66646 |||||| || | || || ||||||| || || ||| |||||||||| | |||| | Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929 Query 66647 AAA 66649 ||| Sbjct 234930 AAA 234932 Score = 116 bits (128), Expect = 5e-21 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 |||| ||||||| | | || | | || || ||||| ||||| || | |||||| Sbjct 232728 TTCTTCTTCGTATTTTCTGTAGAGTGCATCAAATTCGTCACCCCAGCAATCGCTCAATCC 232787 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAA 66072 |||||| | |||||||||||| ||| ||| || | ||| |||||| |||||| Sbjct 232788 TGGACATCTGTTCGGACACATCAAACTCCAAGTTCCATC-TGATTCTACTCGTCTCATAA 232846 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 | ||| || ||||||||||| ||||||||||| | |||| || || ||||| | Sbjct 232847 ATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTTCCCG 232906 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 |||||||||| | ||| | || | | |||||| |||||| |||||||| || || | Sbjct 232907 TATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAAATAG 232966 Query 66193 CCATAACTCCAGG 66205 | | | |||| || Sbjct 232967 CAAAAGCTCCGGG 232979 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 65395 TACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 65454 |||| |||||| | |||||| |||| ||| ||| || || || || ||||| | || Sbjct 230091 TACCTTTACTGACAGGTGATCCTTCATAAGTACTGTAGGGACCATCTTTTTCAGCAATTT 230150 Query 65455 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 65508 |||||||||| ||||| || || ||||| || |||||||| || | ||||||| Sbjct 230151 CACAACTCGCTTCTAAAGCTCCATAATAGATTGTTTCGAATATTTGTTTATTTA 230204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657982876011400