Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 102 8e-17 seq8572 95.1 1e-14 seq259 89.7 5e-13 >seq5 Length=1739417 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| |||||||| || || | || | || | ||||| | ||||||||| Sbjct 582064 GTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCA-TCTTCCAACTGTTTACC 582006 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||| ||| || |||||||| || |||||||||||||| ||| || ||| Sbjct 582005 AGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCTTT 581946 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | ||||||| || || || || | || | || || ||||| | || Sbjct 581945 TACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTGAGGGT 581886 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 581885 CTTCACGAAAATCTGCAT 581868 >seq8572 Length=13345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTC-GTCGGGGGCGCAATATTGTACTATTTC 153691 || || |||||||| |||||||| |||||||| | || | || |||||| || || || Sbjct 8743 GCGATGGACGCCAAATTGCAAACAGCAGTTTCCGATGGTGACG-AATATTCGACAATCTC 8685 Query 153692 CGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACA 153751 || |||||||||||||||| ||| || ||| | |||||| |||| ||||| Sbjct 8684 GGCGCACAAATTGCTGCATTGAATCGTACCCAAATGTTTCTGATTGGATTTGTAATTACA 8625 Query 153752 AGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 |||||||||||| || | ||| ||| || ||||| Sbjct 8624 AGCGTCCTTGTAAAGGACGTACGGTCCTCCCGTTTC 8589 >seq259 Length=588930 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGA 139634 ||||||||||||| ||||| | || || ||||| | ||||| || ||| ||| Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468 Query 139635 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGT 139693 ||| | ||| ||||| || || || |||||||| || ||| |||| | || | | | Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATC-TTGAATTTTAGCCTTGACATTT 399409 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | |||||| | ||||| ||||||| ||| | || || || ||||| ||||| || Sbjct 399408 TCAATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACA 399349 Query 139754 AATATTTGCAT 139764 || || ||||| Sbjct 399348 AAGATCTGCAT 399338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495920854532000