Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq86 161 1e-34 >seq86 Length=611229 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 71116 AAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTG 71175 ||| |||| | |||||| ||||||| |||||||||||||| ||||| ||||| |||| | Sbjct 223840 AAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAG 223899 Query 71176 TAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 71235 |||||||| ||||| ||||| | ||| ||||| ||||| |||||||| || || || Sbjct 223900 TAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAA 223959 Query 71236 GCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCT 71295 ||||| ||||||||||||| | ||| ||| | || || ||| | |||||| ||| Sbjct 223960 GCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCT 224019 Query 71296 TTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 |||| | | |||||| ||| ||||| | ||| Sbjct 224020 TTTAATGCTGCCCAATCCCAGAGATCTGTTGG 224051 Score = 136 bits (150), Expect = 5e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 |||||| || |||||||| || || || |||||||||| |||| ||| || || ||||| Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809 Query 72489 AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 |||||| |||||||| ||| ||||| || | || ||||| |||||||| ||||| Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869 Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608 |||||| || | || ||| ||||||| || || ||| |||||||||| | |||| | Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929 Query 72609 AAA 72611 ||| Sbjct 234930 AAA 234932 Score = 132 bits (146), Expect = 6e-26 Identities = 185/254 (73%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 71916 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT-AATC 71974 |||| |||||||| | | || | | || || ||||| ||||| ||| | || |||| Sbjct 232728 TTCTTCTTCGTATTTTCTGTAGAGTGCATCAAATTCGTCACCCCA-GCAATCGCTCAATC 232786 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATT-TACTCGTTTCATA 72033 | |||||| |||||||||||||| ||| |||||| | ||| ||||||| ||||| Sbjct 232787 CTGGACATCTGTTCGGACACATCAAACTCCAAGTTCCATC-TGATTCTACTCGTCTCATA 232845 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || ||| || ||||||||||| ||||| ||||| | |||| ||| || ||||| Sbjct 232846 AATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTTCCC 232905 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||||||||| | ||| | || | | |||||| |||||| |||||||| || || Sbjct 232906 GTATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAAATA 232965 Query 72154 GCCATAACTCCCGG 72167 || | | |||| || Sbjct 232966 GCAAAAGCTCCGGG 232979 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 ||||||| |||| ||| ||| || || |||||||| || | |||||||||||| ||||| Sbjct 230107 TGATCCTTCATAAGTACTGTAGGGACCATCTTTTTCAGCAATTTCACAACTCGCTTCTAA 230166 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATT 71468 ||||||||||| || |||||||| || | ||||| Sbjct 230167 AGCTCCATAATAGATTGTTTCGAATATTTGTTTATT 230202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670945534394600