Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq93 105 7e-18 seq5 98.7 1e-15 >seq93 Length=855823 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | | |||||| || ||||| | || ||||| ||||| |||||||| ||| Sbjct 276825 CCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAT 276766 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || | |||||| || || | ||||||||||| || ||||| || Sbjct 276765 AGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGG 276706 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||||| ||| | | || | ||||| | |||||||||| Sbjct 276705 ATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTACT 276646 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | || ||||| ||||| || || || || || |||||| Sbjct 276645 TCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATA 276598 >seq5 Length=1739417 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || || ||||| || |||||||| || | || | || | ||||| | |||||||| Sbjct 582064 GTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCA-TCTTCCAACTGTTTACC 582006 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||||| ||| || |||||||| || |||||||||||||| || || ||| Sbjct 582005 AGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCTTT 581946 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 || | ||| | ||||| | ||||| ||||| | ||| | || || ||||| | || Sbjct 581945 TACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTGAGGGT 581886 Query 143167 TTTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 581885 CTTCACGAAAATCTGCAT 581868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506868094657200