Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq259 165 2e-35 seq5 143 6e-29 seq207 95.1 3e-14 seq2617 89.7 1e-12 >seq259 Length=588930 Score = 165 bits (182), Expect = 2e-35 Identities = 153/194 (79%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| || || || || |||||||| || ||||||| ||||||||| ||||| | Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | || ||||||||||| || |||||||||||||| ||||| || || || ||||||| Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCCTTGACATTTT 399408 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || |||||||| || ||||| || || || || || || || | ||||| |||| Sbjct 399407 CAATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACAA 399348 Query 104550 ATATCTGCATTTTG 104563 | |||||||| ||| Sbjct 399347 AGATCTGCATGTTG 399334 >seq5 Length=1739417 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || ||||||||||| || ||||| || ||||| | || ||||| | Sbjct 582073 AGATGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAAC 582014 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 ||||| |||||||| || | | ||||||||| || || || |||||||| || || ||| Sbjct 582013 TGTTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATC 581954 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || |||||||||||||| | || ||| |||||| || || | ||||| || || || Sbjct 581953 TTGGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCG 581894 Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 || || || || || || |||||||| || || Sbjct 581893 GTGAGGGTCTTCACGAAAATCTGCATCTTCTG 581862 >seq207 Length=511460 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || | || || | ||| | ||| | ||| |||||||| ||||| ||||||||||| Sbjct 361877 TCCACCACGTAATCTCAATACCAAATGGAGTGTGGATTCTTTTTGAATGTTATAGTCAGA 361936 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||| ||| | | ||||||| ||||||||| || || || || | ||| |||||||| || Sbjct 361937 TAGGGTTTTGTCATCTTCTAATTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCAGGTGG 361996 Query 104452 TATTCCT 104458 || ||| Sbjct 361997 GATACCT 362003 >seq2617 Length=42959 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 238571 AGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAA 238630 |||| |||| || ||| || |||||||| || ||||| ||| | | || | ||| Sbjct 24058 AGCCCAAACACATGATGATCTTTGGAATTCGGCTCAGATTCAACTCACCAAACACGCCAA 24117 Query 238631 AATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCC 238690 |||||| | |||||| ||||||||||||| || || ||| | |||||||| || ||| Sbjct 24118 GATGCATGGCTTCTTAAGAATGTATTGGGCAAAGAAAATATTAGAATGGACAAGTAGTCC 24177 Query 238691 AAAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATA 238732 | | ||||| | | | | || ||| ||| |||| |||||||| Sbjct 24178 AGAAGAAGC-CCTGGCAACAGCTATATATTTGAATGATAAATA 24219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151057843339180