Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq259 165 2e-35
seq5 143 6e-29
seq207 95.1 3e-14
seq2617 89.7 1e-12
>seq259
Length=588930
Score = 165 bits (182), Expect = 2e-35
Identities = 153/194 (79%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
|||| ||||| || || || || |||||||| || ||||||| ||||||||| ||||| |
Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489
| | || ||||||||||| || |||||||||||||| ||||| || || || |||||||
Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCCTTGACATTTT 399408
Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549
| | || |||||||| || ||||| || || || || || || || | ||||| ||||
Sbjct 399407 CAATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACAA 399348
Query 104550 ATATCTGCATTTTG 104563
| |||||||| |||
Sbjct 399347 AGATCTGCATGTTG 399334
>seq5
Length=1739417
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413
||||| | || || ||||||||||| || ||||| || ||||| | || ||||| |
Sbjct 582073 AGATGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAAC 582014
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
||||| |||||||| || | | ||||||||| || || || |||||||| || || |||
Sbjct 582013 TGTTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATC 581954
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|| |||||||||||||| | || ||| |||||| || || | ||||| || || ||
Sbjct 581953 TTGGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCG 581894
Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565
|| || || || || || |||||||| || ||
Sbjct 581893 GTGAGGGTCTTCACGAAAATCTGCATCTTCTG 581862
>seq207
Length=511460
Score = 95.1 bits (104), Expect = 3e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391
||| || | || || | ||| | ||| | ||| |||||||| ||||| |||||||||||
Sbjct 361877 TCCACCACGTAATCTCAATACCAAATGGAGTGTGGATTCTTTTTGAATGTTATAGTCAGA 361936
Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451
||| ||| | | ||||||| ||||||||| || || || || | ||| |||||||| ||
Sbjct 361937 TAGGGTTTTGTCATCTTCTAATTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCAGGTGG 361996
Query 104452 TATTCCT 104458
|| |||
Sbjct 361997 GATACCT 362003
>seq2617
Length=42959
Score = 89.7 bits (98), Expect = 1e-12
Identities = 119/163 (73%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 238571 AGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAA 238630
|||| |||| || ||| || |||||||| || ||||| ||| | | || | |||
Sbjct 24058 AGCCCAAACACATGATGATCTTTGGAATTCGGCTCAGATTCAACTCACCAAACACGCCAA 24117
Query 238631 AATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCC 238690
|||||| | |||||| ||||||||||||| || || ||| | |||||||| || |||
Sbjct 24118 GATGCATGGCTTCTTAAGAATGTATTGGGCAAAGAAAATATTAGAATGGACAAGTAGTCC 24177
Query 238691 AAAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATA 238732
| | ||||| | | | | || ||| ||| |||| ||||||||
Sbjct 24178 AGAAGAAGC-CCTGGCAACAGCTATATATTTGAATGATAAATA 24219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151057843339180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |