Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2273 123 1e-23 seq9 118 6e-22 seq4199 114 7e-21 seq1829 109 3e-19 seq1976 105 3e-18 >seq2273 Length=101469 Score = 123 bits (136), Expect = 1e-23 Identities = 83/93 (89%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||| Sbjct 66708 AATTTATAAAAAAT---ATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 66652 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 66651 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 66619 >seq9 Length=1833027 Score = 118 bits (130), Expect = 6e-22 Identities = 88/103 (85%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTT 11486 || || | |||||| | |||| |||||| ||||||| |||||||||| ||||||| Sbjct 1298410 AATTAAAAAATTAAGAGAAAAAAAAATTGTGGCCCATGGGAGGATCGAACTCACGACCTT 1298351 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1298350 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1298308 Score = 114 bits (126), Expect = 7e-21 Identities = 84/96 (88%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 11437 AATTAATA-AAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||||| | ||||| |||||| ||||||| |||||||||| |||||||||||||| Sbjct 1363351 AATTAAAAGAAAAAAAAAATTGTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTA 1363292 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 1363291 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1363256 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| |||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1363493 TGGCTCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1363434 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1363433 TGAGCTAATGGGCC 1363420 Score = 86.0 bits (94), Expect = 3e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||| |||||| ||| ||| |||||||||| |||||||||||||||||||| Sbjct 1363637 ATGAAAAA--AAATTGAAGCCTATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 1363580 Query 11500 CGACGCTCTRACCAACTGAG-CTAATGGGCC 11529 |||| ||| ||||||| || |||||||||| Sbjct 1363579 CGACACTCCAACCAACTAAGACTAATGGGCC 1363549 >seq4199 Length=47188 Score = 114 bits (126), Expect = 7e-21 Identities = 81/93 (87%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| ||||| | |||||||||| |||||||||| ||||||||||||||||| Sbjct 11755 AATTAACAAAAATT----TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 11810 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 11811 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 11843 >seq1829 Length=51911 Score = 109 bits (120), Expect = 3e-19 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| | Sbjct 20225 AAATGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAA 20166 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| Sbjct 20165 CCAACTGAGCTAATGGGCC 20147 >seq1976 Length=66522 Score = 105 bits (116), Expect = 3e-18 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11458 GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTG 11517 ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 7023 GCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTG 6964 Query 11518 AGCTAATGGGCC 11529 |||||||||||| Sbjct 6963 AGCTAATGGGCC 6952 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261417629859460