Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq2273 123 1e-23
seq9 118 6e-22
seq4199 114 7e-21
seq1829 109 3e-19
seq1976 105 3e-18
>seq2273
Length=101469
Score = 123 bits (136), Expect = 1e-23
Identities = 83/93 (89%), Gaps = 3/93 (3%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 66708 AATTTATAAAAAAT---ATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 66652
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 66651 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 66619
>seq9
Length=1833027
Score = 118 bits (130), Expect = 6e-22
Identities = 88/103 (85%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTT 11486
|| || | |||||| | |||| |||||| ||||||| |||||||||| |||||||
Sbjct 1298410 AATTAAAAAATTAAGAGAAAAAAAAATTGTGGCCCATGGGAGGATCGAACTCACGACCTT 1298351
Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1298350 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1298308
Score = 114 bits (126), Expect = 7e-21
Identities = 84/96 (88%), Gaps = 3/96 (3%)
Strand=Plus/Minus
Query 11437 AATTAATA-AAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
|||||| | ||||| |||||| ||||||| |||||||||| ||||||||||||||
Sbjct 1363351 AATTAAAAGAAAAAAAAAATTGTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTA 1363292
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||||||||||||||
Sbjct 1363291 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1363256
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1363493 TGGCTCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1363434
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 1363433 TGAGCTAATGGGCC 1363420
Score = 86.0 bits (94), Expect = 3e-12
Identities = 75/91 (82%), Gaps = 5/91 (5%)
Strand=Plus/Minus
Query 11442 ATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
|| ||||| |||||| ||| ||| |||||||||| ||||||||||||||||||||
Sbjct 1363637 ATGAAAAA--AAATTGAAGCCTATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 1363580
Query 11500 CGACGCTCTRACCAACTGAG-CTAATGGGCC 11529
|||| ||| ||||||| || ||||||||||
Sbjct 1363579 CGACACTCCAACCAACTAAGACTAATGGGCC 1363549
>seq4199
Length=47188
Score = 114 bits (126), Expect = 7e-21
Identities = 81/93 (87%), Gaps = 4/93 (4%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||| ||||| | |||||||||| |||||||||| |||||||||||||||||
Sbjct 11755 AATTAACAAAAATT----TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 11810
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 11811 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 11843
>seq1829
Length=51911
Score = 109 bits (120), Expect = 3e-19
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 20225 AAATGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAA 20166
Query 11511 CCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||
Sbjct 20165 CCAACTGAGCTAATGGGCC 20147
>seq1976
Length=66522
Score = 105 bits (116), Expect = 3e-18
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 11458 GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTG 11517
||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 7023 GCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTG 6964
Query 11518 AGCTAATGGGCC 11529
||||||||||||
Sbjct 6963 AGCTAATGGGCC 6952
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261417629859460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |