Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq259 125 6e-24 seq93 122 8e-23 seq8065 98.7 9e-16 seq5 87.8 2e-12 >seq259 Length=588930 Score = 125 bits (138), Expect = 6e-24 Identities = 118/148 (80%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 |||||||| ||||||| |||||||| ||||| || ||||| |||||||| || | |||| Sbjct 399483 TGTTTTCCTGCAAAGATCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATT 399424 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCC 94980 || |||||||| | | |||||| || || || || |||| |||||||||||||| Sbjct 399423 TTAGCCTTGACATTTTCAATAGTGTC-GCTAGGCTCAACCTCAAGGGTGATGGTTTTTCC 399365 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | |||||| ||||||||||||||| Sbjct 399364 TGTCAAAGTTTTGACAAAGATCTGCATG 399337 >seq93 Length=855823 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| || | ||||||||||| || | || ||||||||||| | ||| || ||| Sbjct 276826 TCCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGG- 276768 Query 94840 CATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 |||| || | ||||||| ||||||||| | || || | | ||| || || || Sbjct 276767 -ATAGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGT 276709 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || || || ||||| | ||||| || |||||| ||| ||||| | | | || Sbjct 276708 GGGATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCT 276649 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||| ||||| ||||| | ||| ||||||||||||||||| Sbjct 276648 ACTTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 276599 >seq8065 Length=22102 Score = 98.7 bits (108), Expect = 9e-16 Identities = 174/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 94761 GTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 |||||| |||| | | || ||||||| | ||||||||||| || | || |||||| Sbjct 20225 GTTTTTACAAATATCTGCATACCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCC 20166 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCT--CCAGCTGTTTTCCGCCAAAGA 94877 ||||| | ||| |||||| |||| || | || ||| |||||||| | || | Sbjct 20165 TTTTGGATGTTGTAATCGG--ATAGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAA 20108 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | ||| || || ||||| || || |||||||| | |||||| || ||||| Sbjct 20107 TCAGACGTTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGAATTTTAGCTTTGACATTAT 20048 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 || ||||| | | | || || |||| ||||||||||| || | | ||| |||| Sbjct 20047 CGGTGGTGTCGGAGGGTTCCACTTCAAGGGTGATGGTTTTGTCATTCAATGTT---ACAA 19991 Query 94998 AGATCTGCAT 95007 |||||||||| Sbjct 19990 AGATCTGCAT 19981 >seq5 Length=1739417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || ||||||| || | || ||||| || ||||| |||||||| Sbjct 582023 ATCTTCCAACTGTTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTT 581964 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || || || ||| |||||| | | || || || | || || Sbjct 581963 GTCTTGGATCTTGGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAAT 581904 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| || || || ||||| || |||||||| Sbjct 581903 GGTTTTTCCGGTGAGGGTCTTCACGAAAATCTGCAT 581868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448161839970600