Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq93 102 7e-17 seq8065 96.9 3e-15 seq259 93.3 4e-14 seq207 86.0 5e-12 >seq93 Length=855823 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || || ||||| ||| | || ||| | ||||| || || Sbjct 276596 AATATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACCC 276655 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | |||||| || || ||||| || || || || ||||| Sbjct 276656 TCAGACACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGAC 276715 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | ||||||| || ||| || ||| | || || | | | | | | ||| || Sbjct 276716 CAACAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTAC 276775 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||| ||||| || | ||||| ||||| | | || |||||| Sbjct 276776 AACATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCGTCTCAGGGGAGGA 276826 >seq8065 Length=22102 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||| |||| | || ||| | || ||| | ||||| || || | Sbjct 19981 ATGCAGATCTTTGTAA---CATTGAATGACAAAACCATCACCCTTGAAGTGGAACCCTCC 20037 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||| ||| | |||||| || ||| |||||||| || || |||||||| ||| Sbjct 20038 GACACCACCGATAATGTCAAAGCTAAAATTCAAGACAAAGAGGGAATCCCTCCCGACCAA 20097 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||||| || || || || | | ||| | | | | |||||| ||| Sbjct 20098 CAACGTCTGATTTTCGCGGGAAAACATTTGGTTAGCGACCGTACCCTATCCGATTACAAC 20157 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||| ||||| ||||||||||| ||||| Sbjct 20158 ATCCAAAAGGAATCCACAATTCATTTGGTGTT 20189 >seq259 Length=588930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| ||||| || || |||||| | || ||| | || || ||| | Sbjct 399334 CAACATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCC 399393 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||| || || | ||||| || ||| || |||||||| || || || || Sbjct 399394 TAGCGACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGA 399453 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| ||| |||| | | || || ||| | ||||||| |||| | ||||| Sbjct 399454 TCAACAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTA 399513 Query 24167 TAACATTCAAAAAG 24180 ||||||||||||| Sbjct 399514 CAACATTCAAAAAG 399527 >seq207 Length=511460 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 ||| || || || ||||| ||| |||| || | || ||| || ||| | |||||||||| Sbjct 362003 AGGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAA 361944 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATT 24208 || | | || |||||||||||||||||||| ||| | ||||| || || ||||| Sbjct 361943 AACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGTATTGAGATT 361887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429815038178175