Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3349 196 3e-45 seq93 125 5e-24 seq5 113 3e-20 seq259 105 4e-18 seq8065 91.5 1e-13 >seq3349 Length=56643 Score = 196 bits (216), Expect = 3e-45 Identities = 302/431 (70%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC 6230 || ||||| || |||||||| ||||| || || || || ||||||||||| | | Sbjct 26079 CTCAACGTGAACCGTAATGTTGCGGATGCATTTTATCGTTACAAAATGCCTAGGCTTCAA 26020 Query 6231 GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTC 6290 || ||||| || ||||| || || ||||| ||||| || |||||||| ||| |||| || Sbjct 26019 GCTAAGGTGGAAGGTAAAGGCAATGGTATCAAAACAGTTATTGTCAATATGGCTGAGGTT 25960 Query 6291 GCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGC 6350 || || || | || || ||| | || || || || || ||||| || || ||| | || Sbjct 25959 GCCAAAGCAATTGGGCGTCCTCCAACATATCCCACCAAGTATTTTGGATGTGAATTGGGT 25900 Query 6351 GCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCT 6410 |||||||| | ||||||| ||||| || | | || || ||||| || ||| | Sbjct 25899 GCTCAGACCAAACTTGATCATAAAAATGACAGATATATAGTCAACGGTTCTCATGATGTC 25840 Query 6411 GCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470 ||| ||||| ||| | | || || || || | |||||||| || |||| || ||| Sbjct 25839 AACAAACTGCAAGACCTCTTGGATGGATTCATCAGAAAGTTTGTCCTATGTCCTGAGTGC 25780 Query 6471 GATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGC 6530 ||||| |||||||| || | ||||| ||| | |||| | ||| || || ||||| Sbjct 25779 GATAATCCGGAGACAGATTTGATTGTATCTGCTAAGAAAGGCACTATTCAACAAGGCTGT 25720 Query 6531 AAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCACACAAACTCAACACCTTCATACTG 6590 ||||| || |||| ||||| ||| | || |||||||| || || || || || Sbjct 25719 AAAGCATGTGGTTTTCATGGTCTGCTCCAATTTAATCACAAACTAAATACTTTTATCTTG 25660 Query 6591 AAGAATCCTCC 6601 || || ||||| Sbjct 25659 AAAAACCCTCC 25649 >seq93 Length=855823 Score = 125 bits (138), Expect = 5e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || || || || | ||||||||||||||| || ||| |||||||| || ||||| || Sbjct 276828 TTTCCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCG 276769 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | ||| |||| || |||||||||||||| || || || |||||||| |||| Sbjct 276768 GATAGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGT 276709 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| || || ||||| ||||| || || |||| || || ||| ||| Sbjct 276708 GGGATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCT 276649 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| | || || ||||| || ||||| || ||||| || |||||||| ||| Sbjct 276648 ACTTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATTT 276595 >seq5 Length=1739417 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||| || ||| ||| || ||||| ||||| || || | | |||| | || || || || Sbjct 582071 ATGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTG 582012 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||| || ||||| || | || |||||||||| || | |||||||||||| || || Sbjct 582011 TTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTT 581952 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 || ||||| | || ||| || | ||||||||| || ||||| ||||| || || Sbjct 581951 GGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGT 581892 Query 38294 CAAGGTTTTCACGAATATCTGCATGTT 38320 | ||| |||||||| |||||||| || Sbjct 581891 GAGGGTCTTCACGAAAATCTGCATCTT 581865 >seq259 Length=588930 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 |||||||| |||||||| || | | | | | || |||||||||||||| ||||| || Sbjct 399525 TTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGATC 399466 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 | | ||||||||| | || | |||||||| || |||||| ||| ||||| | Sbjct 399465 AATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCA 399406 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | ||| || | | ||||| || | || || ||||| || ||||| ||||| || || Sbjct 399405 ATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACAAAG 399346 Query 38310 ATCTGCATGTT 38320 ||||||||||| Sbjct 399345 ATCTGCATGTT 399335 >seq8065 Length=22102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| | ||||||||||||||||| ||| |||||||| || |||||||| | Sbjct 20206 TACCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCCTTTTGGATGTTGTAATCGG 20147 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| ||| | || |||||||| || || || || |||||||| |||| | Sbjct 20146 ATAGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAG 20087 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| |||||| || ||||| | | || || ||| | Sbjct 20086 GGATTCCCTCTTTGTCTTGAATTTTAGCTTTGACATTATCGGTGGTGTCGGAGGGTTCCA 20027 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || ||||| | |||| ||| || || |||||||| Sbjct 20026 CTTCAAGGGTGATGGTTTTGTCATTCAATGTT---ACAAAGATCTGCAT 19981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334852963128635