Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq86 150 2e-31
>seq86
Length=611229
Score = 150 bits (166), Expect = 2e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 62165 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62224
||| |||| | ||||| ||||||| |||||||||||||| ||||| ||||| |||| |
Sbjct 223840 AAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAG 223899
Query 62225 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62284
|||||||| ||||| ||||| | || ||||| ||||| |||||||| || || ||
Sbjct 223900 TAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAA 223959
Query 62285 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62344
||||| ||||||||||||| | | | ||| | || |||| | |||||||| |||
Sbjct 223960 GCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCT 224019
Query 62345 TTTAGAGGTTCCCAATTCCAAAGATC 62370
|||| | | |||||| ||| |||||
Sbjct 224020 TTTAATGCTGCCCAATCCCAGAGATC 224045
Score = 132 bits (146), Expect = 6e-26
Identities = 139/183 (76%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 63478 AAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63537
|||||| || |||||||| || || || |||||||||| |||| ||| || || |||||
Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809
Query 63538 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63597
||||||||||||||| ||| ||||| || | || ||||| ||||| || |||||
Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869
Query 63598 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63657
|||||| || | || || ||||||| || || ||| |||||||||| | |||| |
Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929
Query 63658 AAA 63660
|||
Sbjct 234930 AAA 234932
Score = 107 bits (118), Expect = 2e-18
Identities = 177/253 (70%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 62965 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024
|||| ||||||| | | || | | || || ||||| ||||| || | || |||
Sbjct 232728 TTCTTCTTCGTATTTTCTGTAGAGTGCATCAAATTCGTCACCCCAGCAATCGCTCAATCC 232787
Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAA 63083
|||||| | |||||||||||| ||| ||| || | ||| |||||| ||||||
Sbjct 232788 TGGACATCTGTTCGGACACATCAAACTCCAAGTTCCATC-TGATTCTACTCGTCTCATAA 232846
Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143
| ||| || ||||||||||| ||||| ||||| | |||| || || ||||| |
Sbjct 232847 ATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTTCCCG 232906
Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203
|||||||||| | ||| | || | | |||||| |||||| |||||||| || || |
Sbjct 232907 TATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAAATAG 232966
Query 63204 CCATAACTCCAGG 63216
| | | |||| ||
Sbjct 232967 CAAAAGCTCCGGG 232979
Score = 84.2 bits (92), Expect = 3e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 62406 TACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 62465
|||| |||||| | |||||| |||| ||| ||| || || || || ||||| | ||
Sbjct 230091 TACCTTTACTGACAGGTGATCCTTCATAAGTACTGTAGGGACCATCTTTTTCAGCAATTT 230150
Query 62466 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 62519
|||||||||| ||||| || || ||||| || |||||||| || | |||||||
Sbjct 230151 CACAACTCGCTTCTAAAGCTCCATAATAGATTGTTTCGAATATTTGTTTATTTA 230204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633449157566000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |