Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq93 132 4e-26 seq259 114 1e-20 seq5 113 4e-20 seq207 82.4 7e-11 >seq93 Length=855823 Score = 132 bits (146), Expect = 4e-26 Identities = 176/242 (73%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || ||| ||||| || ||||| ||||||||||| || ||| | ||||| | ||||| | Sbjct 276591 ACAGAAATATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAG 276650 Query 25051 AGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 | | || ||||| ||||| |||| |||| |||||| ||||| || || || Sbjct 276651 AACCCTCAGACACCATCGAGAACGTCA---AAGC-TAAAATCCAAGACAAGGAGGGAATC 276706 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 ||||| |||||||| || | ||||| ||||| |||||||| || || | || || | Sbjct 276707 CCACCCGACCAACAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTA 276766 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| ||||| || ||||| |||||||| || ||||| ||| | | || || |||||| Sbjct 276767 TCCGACTACAACATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCGTCTCAGGGGAGGA 276826 Query 25227 AA 25228 || Sbjct 276827 AA 276828 >seq259 Length=588930 Score = 114 bits (126), Expect = 1e-20 Identities = 143/194 (74%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| || ||| ||||||| | || || ||| | Sbjct 399338 ATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCCTAGC 399397 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| | || |||| ||| || |||||||| ||||||||||| Sbjct 399398 GACACTATTGAAAATGTCA---AGGCTAAAATTCAA-GATAAAGAAGGAATTCCACCTGA 399453 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | || ||||| || |||||||||||||||| | ||| | ||||| Sbjct 399454 TCAACAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTA 399513 Query 25175 CAATATTCAAAAAG 25188 ||| |||||||||| Sbjct 399514 CAACATTCAAAAAG 399527 >seq5 Length=1739417 Score = 113 bits (124), Expect = 4e-20 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| ||| |||| || | ||||| || | || Sbjct 581868 ATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 581927 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| | || |||| || | || ||||||||||| |||||||| || Sbjct 581928 GACACTATCGAA--AATGTAAAAGCCAAGATCCAA-GACAAAGAAGGCATTCCACCCGAT 581984 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || ||||| || ||||||| || ||| | || ||| Sbjct 581985 CAACAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTAC 582044 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 || ||||| ||||| ||||| || ||| Sbjct 582045 AACATTCAGAAAGAGTCCACCCTCCAT 582071 >seq207 Length=511460 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || |||||||| || ||||| |||| || ||||| ||||||||||||||||| Sbjct 362003 AGGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAA 361944 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || | || || || ||||||||||||||||| || ||||| || Sbjct 361943 AACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGT 361896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433206083844275