Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq93 132 4e-26
seq259 114 1e-20
seq5 113 4e-20
seq207 82.4 7e-11
>seq93
Length=855823
Score = 132 bits (146), Expect = 4e-26
Identities = 176/242 (73%), Gaps = 8/242 (3%)
Strand=Plus/Plus
Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050
|| ||| ||||| || ||||| ||||||||||| || ||| | ||||| | ||||| |
Sbjct 276591 ACAGAAATATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAG 276650
Query 25051 AGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106
| | || ||||| ||||| |||| |||| |||||| ||||| || || ||
Sbjct 276651 AACCCTCAGACACCATCGAGAACGTCA---AAGC-TAAAATCCAAGACAAGGAGGGAATC 276706
Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166
||||| |||||||| || | ||||| ||||| |||||||| || || | || || |
Sbjct 276707 CCACCCGACCAACAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTA 276766
Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
||| ||||| || ||||| |||||||| || ||||| ||| | | || || ||||||
Sbjct 276767 TCCGACTACAACATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCGTCTCAGGGGAGGA 276826
Query 25227 AA 25228
||
Sbjct 276827 AA 276828
>seq259
Length=588930
Score = 114 bits (126), Expect = 1e-20
Identities = 143/194 (74%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || |||||||| || ||| ||||||| | || || ||| |
Sbjct 399338 ATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCCTAGC 399397
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||||| || |||| | || |||| ||| || |||||||| |||||||||||
Sbjct 399398 GACACTATTGAAAATGTCA---AGGCTAAAATTCAA-GATAAAGAAGGAATTCCACCTGA 399453
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| | | || ||||| || |||||||||||||||| | ||| | |||||
Sbjct 399454 TCAACAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTA 399513
Query 25175 CAATATTCAAAAAG 25188
||| ||||||||||
Sbjct 399514 CAACATTCAAAAAG 399527
>seq5
Length=1739417
Score = 113 bits (124), Expect = 4e-20
Identities = 151/207 (73%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| ||| |||| || | ||||| || | ||
Sbjct 581868 ATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 581927
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||||||||| | || |||| || | || ||||||||||| |||||||| ||
Sbjct 581928 GACACTATCGAA--AATGTAAAAGCCAAGATCCAA-GACAAAGAAGGCATTCCACCCGAT 581984
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || ||||| || ||||| || ||||||| || ||| | || |||
Sbjct 581985 CAACAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTAC 582044
Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202
|| ||||| ||||| ||||| || |||
Sbjct 582045 AACATTCAGAAAGAGTCCACCCTCCAT 582071
>seq207
Length=511460
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||| || |||||||| || ||||| |||| || ||||| |||||||||||||||||
Sbjct 362003 AGGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAA 361944
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| | || || || ||||||||||||||||| || ||||| ||
Sbjct 361943 AACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGT 361896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433206083844275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |