Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq93 179 3e-40
seq8572 161 8e-35
seq8065 149 5e-31
seq5 131 1e-25
seq259 123 2e-23
seq207 100 2e-16
seq86 87.8 2e-12
>seq93
Length=855823
Score = 179 bits (198), Expect = 3e-40
Identities = 171/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| ||||| || ||||| || ||||| || || ||||| |||| |||||||| ||| |
Sbjct 276595 AAATATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACC 276654
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| | || ||| | || | ||||| ||||| |||||||||||||| || ||||||||
Sbjct 276655 CTCAGACACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGA 276714
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
||||||||||| || || ||||| ||||| || ||||| ||| ||| | ||||| ||
Sbjct 276715 CCAACAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTA 276774
Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|||||| ||||| ||||||||| | ||||| || |||||
Sbjct 276775 CAACATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCG 276813
>seq8572
Length=13345
Score = 161 bits (178), Expect = 8e-35
Identities = 333/492 (68%), Gaps = 5/492 (1%)
Strand=Plus/Minus
Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTG-TACTCGACAATTTCGGC 129755
|| || ||||||||||| || ||| |||| | || || || |||||||| |||||
Sbjct 8740 ATGGACGCCAAATTGCAAACAGCAGTTTCCGATG-GTGACGAATATTCGACAATCTCGGC 8682
Query 129756 GCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGC 129815
||||||||| || || ||| || |||||||| || ||||| ||| || |||||
Sbjct 8681 GCACAAATTGCTGCATTGAATCGTACCCAAATGTTTCTGATTGGATTTGTAATTACAAGC 8622
Query 129816 ATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAA 129875
|| ||||| | | |||||| |||||||| | ||||| |||||||||| || |
Sbjct 8621 GTCCTTGTAAAGGACGTACGGTCCTCCCGTTTCTATTTGCGCATCGACAATGGCTCTCCA 8562
Query 129876 CAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATACAG 129935
| |||||| || || | | | || | ||||| ||||||| | | ||| |
Sbjct 8561 GAGGTCTCGTGCATTTACTTTGCGAACGTAATTGCCGGCCGCCTCGTATTCTGCGTACTG 8502
Query 129936 TTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAA 129995
|||||||||| ||||| || | | ||| |||||| | | || ||||| |
Sbjct 8501 GCGTTCAAATTCGTTGCCGTATATGAGATGAAGCCCGGGCGATCGATGTGGGCACATGAG 8442
Query 129996 ACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTA 130055
|||||||||| | | |||||| || |||||||| | || | ||| || |||||
Sbjct 8441 ACTCCACATTTCGTTGTTTTCGACGCGCTTCATAAATTCGTTTGGAATCCAGAGAGCGTA 8382
Query 130056 CAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATC 130115
|||| || ||||| || | ||||| || | || ||| || || || | ||
Sbjct 8381 GAACAGGTCGCGCGCCCGACTTTGTTCGGCGCCAGTATTTTTTTTAAGGTCCAGAACGTC 8322
Query 130116 GTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CC 130172
|||||||||||||||||||||| | || | || | |||||| |||||| ||
Sbjct 8321 AAAAATGTCGGCGTGCCACGGTTCGATGTACACGGCAAACGCGCCCGGTCGTTTGTTTCC 8262
Query 130173 CCCTTGGTCAAC 130184
|||||||| ||
Sbjct 8261 TCCTTGGTCGAC 8250
Score = 109 bits (120), Expect = 5e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195
||| |||| |||| ||| ||||| || | ||||||||| |||||| ||| || ||||||
Sbjct 9367 TGACAGTCTCCCGACAAGACGCGGCGCATGTAAATGTTATTGGTGGTCGGTTCGAACGAT 9308
Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAG 129255
|| |||| ||||| ||||| ||||||||||| || |||||| ||| || |||||
Sbjct 9307 TCTGTGTTTCCTAAAATTTGCGCCGTTGTCGCAGTAGGCATGAGAGCTACAAGTTGCGAG 9248
Query 129256 TTTCGCAAACCGT 129268
|| || |||||||
Sbjct 9247 TTACGTAAACCGT 9235
>seq8065
Length=22102
Score = 149 bits (164), Expect = 5e-31
Identities = 173/232 (75%), Gaps = 11/232 (5%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| ||| || | | ||||| |||| |||||||||||| || ||
Sbjct 19981 ATGCAGATCTTTGT---AACATTGAATGACAAAACCATCACCCTTGAAGTGGAACCCTCC 20037
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| || || ||||| |||||||||||||| ||||| || || ||||| |||
Sbjct 20038 GACACCACCGATAATGTCAAAGCTAAAATTCAAGACAAAGAGGGAATCCCTCCCGACCAA 20097
Query 22339 CAACGTCTTATATTTGCCGGCAAACA----GTTAGAGGATCACCGCACCGTCTCCGATTA 22394
|||||||| || || || || ||||| ||||| | |||| ||| | ||||||||
Sbjct 20098 CAACGTCTGATTTTCGCGGGAAAACATTTGGTTAGCG----ACCGTACCCTATCCGATTA 20153
Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||| ||||| |||||||| || ||||| || ||||| | | ||||||
Sbjct 20154 CAACATCCAAAAGGAATCCACAATTCATTTGGTGTTGCGTCTCGGAGGAGGT 20205
>seq5
Length=1739417
Score = 131 bits (144), Expect = 1e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || || || | ||||| ||||| | ||| | ||||| ||| |
Sbjct 581865 AAGATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCT 581924
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||| || | || || | ||| || || |||||||| || || ||||||||||||
Sbjct 581925 TCCGACACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCACCCGAT 581984
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
||||| ||| | || ||||| || |||||||| || ||| || || | || || |||
Sbjct 581985 CAACAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTAC 582044
Query 22396 AACATTCAAAAAGAATCCACCATACAT 22422
|||||||| ||||| |||||| | |||
Sbjct 582045 AACATTCAGAAAGAGTCCACCCTCCAT 582071
>seq259
Length=588930
Score = 123 bits (136), Expect = 2e-23
Identities = 145/196 (74%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| || ||||| || ||||| |||||||| || || ||||| |||| ||||| || ||
Sbjct 399332 GTCAACATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAG 399391
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
| | ||| || | || || |||| ||||||||||| || || || ||||||||
Sbjct 399392 CCTAGCGACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCT 399451
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
||||||||| | | || ||||| || ||||| ||||| ||| | || | || |||
Sbjct 399452 GATCAACAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGAT 399511
Query 22393 TACAACATTCAAAAAG 22408
||||||||||||||||
Sbjct 399512 TACAACATTCAAAAAG 399527
>seq207
Length=511460
Score = 100 bits (110), Expect = 2e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380
||||| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| ||
Sbjct 362002 GGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAAA 361943
Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440
||| | || || || |||||||||||||||||||| | ||||| || ||| |||| ||
Sbjct 361942 ACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGTATTGAGATTACGT 361883
Query 22441 GGAGG 22445
|| ||
Sbjct 361882 GGTGG 361878
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| |||||||||||||| ||||| ||||| || ||||| |||| |||||||| ||| |
Sbjct 364054 AAAAATGCAAATTTTTGTGAAAACATTAACAGGGAAAACTATCACCCTTGAAGTTGAACC 363995
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324
| ||| | | || || ||||| || ||||||||||| || ||||
Sbjct 363994 ATCAGATTCTATTGAAAATGTCAAATCTAAGATTCAAGACAAAGAAGGTA 363945
>seq86
Length=611229
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192
|||||||| || |||| |||||| | ||| |||||| || || | || |||||
Sbjct 223867 ACTTGAAATTCTCCCGACAAAACTCTTCGAGAGTAAATATTTGATGTATATGGTTCAAAT 223926
Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252
||||||||||| ||||| ||||| || || | || || ||||| |||| |||
Sbjct 223927 GATTCATTGTTTCCTAAAATTTGTGCTGTGGAAGCAGTTGGCATAGGTGCCATAAGAAGA 223986
Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT 129312
|| || || | ||||| || | || | || ||||||| || ||| ||||| | |
Sbjct 223987 GAATTACGAACGCCGTGTTGACTGATTTTTTCTTTTAATGCTGCCCAATCCCAGAGATCT 224046
Query 129313 GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC 129350
|| || || |||||||| || ||||| | |||||
Sbjct 224047 GTTGGGGTAACATTCCACATATCATATTGTAGGATACC 224084
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 129984 CGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTAC 130043
|||||||||||||||||| ||||||| | ||| |||||| ||||||| ||||||||
Sbjct 232800 CGGACACATCAAACTCCAAGTTCCATCTGATTCTACTCGTCTCATAAATTCATCGGGTAT 232859
Query 130044 CCACAGGGCGTACAACAAATCTCGCGCT 130071
||| || || || || |||||||| |||
Sbjct 232860 CCAAAGAGCATAAAATAAATCTCGAGCT 232887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419609910183025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |