Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq93 179 3e-40 seq8572 161 8e-35 seq8065 149 5e-31 seq5 131 1e-25 seq259 123 2e-23 seq207 100 2e-16 seq86 87.8 2e-12 >seq93 Length=855823 Score = 179 bits (198), Expect = 3e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || ||||| || || ||||| |||| |||||||| ||| | Sbjct 276595 AAATATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACC 276654 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | || ||| | || | ||||| ||||| |||||||||||||| || |||||||| Sbjct 276655 CTCAGACACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGA 276714 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||||||| || || ||||| ||||| || ||||| ||| ||| | ||||| || Sbjct 276715 CCAACAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTA 276774 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||| ||||| ||||||||| | ||||| || ||||| Sbjct 276775 CAACATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCG 276813 >seq8572 Length=13345 Score = 161 bits (178), Expect = 8e-35 Identities = 333/492 (68%), Gaps = 5/492 (1%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTG-TACTCGACAATTTCGGC 129755 || || ||||||||||| || ||| |||| | || || || |||||||| ||||| Sbjct 8740 ATGGACGCCAAATTGCAAACAGCAGTTTCCGATG-GTGACGAATATTCGACAATCTCGGC 8682 Query 129756 GCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGC 129815 ||||||||| || || ||| || |||||||| || ||||| ||| || ||||| Sbjct 8681 GCACAAATTGCTGCATTGAATCGTACCCAAATGTTTCTGATTGGATTTGTAATTACAAGC 8622 Query 129816 ATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAA 129875 || ||||| | | |||||| |||||||| | ||||| |||||||||| || | Sbjct 8621 GTCCTTGTAAAGGACGTACGGTCCTCCCGTTTCTATTTGCGCATCGACAATGGCTCTCCA 8562 Query 129876 CAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATACAG 129935 | |||||| || || | | | || | ||||| ||||||| | | ||| | Sbjct 8561 GAGGTCTCGTGCATTTACTTTGCGAACGTAATTGCCGGCCGCCTCGTATTCTGCGTACTG 8502 Query 129936 TTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAA 129995 |||||||||| ||||| || | | ||| |||||| | | || ||||| | Sbjct 8501 GCGTTCAAATTCGTTGCCGTATATGAGATGAAGCCCGGGCGATCGATGTGGGCACATGAG 8442 Query 129996 ACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTA 130055 |||||||||| | | |||||| || |||||||| | || | ||| || ||||| Sbjct 8441 ACTCCACATTTCGTTGTTTTCGACGCGCTTCATAAATTCGTTTGGAATCCAGAGAGCGTA 8382 Query 130056 CAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATC 130115 |||| || ||||| || | ||||| || | || ||| || || || | || Sbjct 8381 GAACAGGTCGCGCGCCCGACTTTGTTCGGCGCCAGTATTTTTTTTAAGGTCCAGAACGTC 8322 Query 130116 GTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CC 130172 |||||||||||||||||||||| | || | || | |||||| |||||| || Sbjct 8321 AAAAATGTCGGCGTGCCACGGTTCGATGTACACGGCAAACGCGCCCGGTCGTTTGTTTCC 8262 Query 130173 CCCTTGGTCAAC 130184 |||||||| || Sbjct 8261 TCCTTGGTCGAC 8250 Score = 109 bits (120), Expect = 5e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195 ||| |||| |||| ||| ||||| || | ||||||||| |||||| ||| || |||||| Sbjct 9367 TGACAGTCTCCCGACAAGACGCGGCGCATGTAAATGTTATTGGTGGTCGGTTCGAACGAT 9308 Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAG 129255 || |||| ||||| ||||| ||||||||||| || |||||| ||| || ||||| Sbjct 9307 TCTGTGTTTCCTAAAATTTGCGCCGTTGTCGCAGTAGGCATGAGAGCTACAAGTTGCGAG 9248 Query 129256 TTTCGCAAACCGT 129268 || || ||||||| Sbjct 9247 TTACGTAAACCGT 9235 >seq8065 Length=22102 Score = 149 bits (164), Expect = 5e-31 Identities = 173/232 (75%), Gaps = 11/232 (5%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||| || | | ||||| |||| |||||||||||| || || Sbjct 19981 ATGCAGATCTTTGT---AACATTGAATGACAAAACCATCACCCTTGAAGTGGAACCCTCC 20037 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| || || ||||| |||||||||||||| ||||| || || ||||| ||| Sbjct 20038 GACACCACCGATAATGTCAAAGCTAAAATTCAAGACAAAGAGGGAATCCCTCCCGACCAA 20097 Query 22339 CAACGTCTTATATTTGCCGGCAAACA----GTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||| || || || || ||||| ||||| | |||| ||| | |||||||| Sbjct 20098 CAACGTCTGATTTTCGCGGGAAAACATTTGGTTAGCG----ACCGTACCCTATCCGATTA 20153 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||| |||||||| || ||||| || ||||| | | |||||| Sbjct 20154 CAACATCCAAAAGGAATCCACAATTCATTTGGTGTTGCGTCTCGGAGGAGGT 20205 >seq5 Length=1739417 Score = 131 bits (144), Expect = 1e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | ||||| ||||| | ||| | ||||| ||| | Sbjct 581865 AAGATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCT 581924 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | || || | ||| || || |||||||| || || |||||||||||| Sbjct 581925 TCCGACACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCACCCGAT 581984 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||| | || ||||| || |||||||| || ||| || || | || || ||| Sbjct 581985 CAACAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTAC 582044 Query 22396 AACATTCAAAAAGAATCCACCATACAT 22422 |||||||| ||||| |||||| | ||| Sbjct 582045 AACATTCAGAAAGAGTCCACCCTCCAT 582071 >seq259 Length=588930 Score = 123 bits (136), Expect = 2e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || ||||| |||||||| || || ||||| |||| ||||| || || Sbjct 399332 GTCAACATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAG 399391 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | ||| || | || || |||| ||||||||||| || || || |||||||| Sbjct 399392 CCTAGCGACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCT 399451 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||||||| | | || ||||| || ||||| ||||| ||| | || | || ||| Sbjct 399452 GATCAACAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGAT 399511 Query 22393 TACAACATTCAAAAAG 22408 |||||||||||||||| Sbjct 399512 TACAACATTCAAAAAG 399527 >seq207 Length=511460 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| || Sbjct 362002 GGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAAA 361943 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | || || || |||||||||||||||||||| | ||||| || ||| |||| || Sbjct 361942 ACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGTATTGAGATTACGT 361883 Query 22441 GGAGG 22445 || || Sbjct 361882 GGTGG 361878 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||||||||| ||||| ||||| || ||||| |||| |||||||| ||| | Sbjct 364054 AAAAATGCAAATTTTTGTGAAAACATTAACAGGGAAAACTATCACCCTTGAAGTTGAACC 363995 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 | ||| | | || || ||||| || ||||||||||| || |||| Sbjct 363994 ATCAGATTCTATTGAAAATGTCAAATCTAAGATTCAAGACAAAGAAGGTA 363945 >seq86 Length=611229 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 |||||||| || |||| |||||| | ||| |||||| || || | || ||||| Sbjct 223867 ACTTGAAATTCTCCCGACAAAACTCTTCGAGAGTAAATATTTGATGTATATGGTTCAAAT 223926 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252 ||||||||||| ||||| ||||| || || | || || ||||| |||| ||| Sbjct 223927 GATTCATTGTTTCCTAAAATTTGTGCTGTGGAAGCAGTTGGCATAGGTGCCATAAGAAGA 223986 Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT 129312 || || || | ||||| || | || | || ||||||| || ||| ||||| | | Sbjct 223987 GAATTACGAACGCCGTGTTGACTGATTTTTTCTTTTAATGCTGCCCAATCCCAGAGATCT 224046 Query 129313 GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC 129350 || || || |||||||| || ||||| | ||||| Sbjct 224047 GTTGGGGTAACATTCCACATATCATATTGTAGGATACC 224084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 129984 CGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTAC 130043 |||||||||||||||||| ||||||| | ||| |||||| ||||||| |||||||| Sbjct 232800 CGGACACATCAAACTCCAAGTTCCATCTGATTCTACTCGTCTCATAAATTCATCGGGTAT 232859 Query 130044 CCACAGGGCGTACAACAAATCTCGCGCT 130071 ||| || || || || |||||||| ||| Sbjct 232860 CCAAAGAGCATAAAATAAATCTCGAGCT 232887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419609910183025