Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq93 190 4e-43
seq5 168 1e-36
seq259 143 5e-29
seq8065 122 2e-22
seq155 86.0 1e-11
seq25 86.0 1e-11
>seq93
Length=855823
Score = 190 bits (210), Expect = 4e-43
Identities = 180/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291
|||||||| | || ||||| ||||| || || ||||| || ||||||||||| || |||
Sbjct 276828 TTTCCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCG 276769
Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351
|| || || | || || || || || || |||||||| || || | |||||||||||||
Sbjct 276768 GATAGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGT 276709
Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411
|| || || ||||||||||| || || || |||||| |||||||||||||| | ||||
Sbjct 276708 GGGATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCT 276649
Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| | |||||| ||||| || || | ||||| || || ||||||||
Sbjct 276648 ACTTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 276599
>seq5
Length=1739417
Score = 168 bits (186), Expect = 1e-36
Identities = 159/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || ||||||||||| || ||||| || || || || || | |||||||| |||||
Sbjct 582070 TGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTGT 582011
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | | ||||| ||||||||||||||||| |||||||| |||||
Sbjct 582010 TTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTTG 581951
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || || ||||| ||||| | | ||| |||||||| || ||||||||||| |||
Sbjct 581950 GCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTG 581891
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
|||||||| ||||| ||||||||
Sbjct 581890 AGGGTCTTCACGAAAATCTGCAT 581868
>seq259
Length=588930
Score = 143 bits (158), Expect = 5e-29
Identities = 148/191 (77%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331
||||||| ||||| ||||| || || || || ||||||||||| || || || || || |
Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468
Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391
| | ||||||||| || |||||||| ||||| || |||||||| || |||||||| |
Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCCTTGACATTTT 399408
Query 68392 CGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450
| || ||||| ||| | || || || | ||||||||||||||| || | || |||||
Sbjct 399407 CAATAGTGTC-GCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACA 399349
Query 68451 AATATCTGCAT 68461
|| ||||||||
Sbjct 399348 AAGATCTGCAT 399338
>seq8065
Length=22102
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | || ||||| ||||| || | ||||| || ||||||||||| ||||||||
Sbjct 20204 CCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCCTTTTGGATGTTGTAATCGGAT 20145
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | | | || || || || ||||| || || | |||||||||||| ||
Sbjct 20144 AGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAGGG 20085
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || ||||||||||| || || ||||| ||| ||||||| | | ||| |||
Sbjct 20084 ATTCCCTCTTTGTCTTGAATTTTAGCTTTGACATTATCGGTGGTGTCGGAGGGTTCCACT 20025
Query 68415 TCCAAGGTGATGGTTTT 68431
|| | ||||||||||||
Sbjct 20024 TCAAGGGTGATGGTTTT 20008
>seq155
Length=542155
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
|||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||||
Sbjct 231417 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 231358
Query 84516 CCCACATCGGGC 84527
||||| | ||||
Sbjct 231357 CCCACGTTGGGC 231346
>seq25
Length=1185957
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
|||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||||
Sbjct 986346 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 986287
Query 84516 CCCACATCGGGC 84527
||||| | ||||
Sbjct 986286 CCCACGTTGGGC 986275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921356454336200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |