Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq93 113 5e-20 seq2541 111 2e-19 seq2420 111 2e-19 seq772 111 2e-19 seq45 109 6e-19 seq305 105 7e-18 seq4 105 7e-18 seq25 104 3e-17 seq53 98.7 1e-15 seq8065 93.3 5e-14 seq1110 89.7 6e-13 >seq93 Length=855823 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||||||||||||||| | ||| |||||||| || ||||| || | Sbjct 276825 CCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAT 276766 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || | || || || ||||| || || || || ||||||| ||| Sbjct 276765 AGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGG 276706 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| |||||| ||||| || | | ||||| | ||| || Sbjct 276705 ATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTACT 276646 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | ||||| |||||||| || | ||||| |||||||| ||||| || Sbjct 276645 TCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATT 276596 >seq2541 Length=72813 Score = 111 bits (122), Expect = 2e-19 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||| | ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 64413 TTTTTAAAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 64472 Query 57052 ACATACTCACCACTATACTACCGAGGATTGA 57082 ||||| ||||||||||||||||||||||| Sbjct 64473 GGATACTGACCACTATACTACCGAGGATTGA 64503 >seq2420 Length=127154 Score = 111 bits (122), Expect = 2e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 8312 AAAAAATATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8371 Query 57058 TCACCACTATACTACCGAGGATTGAA 57083 | |||||||||||||||||||||||| Sbjct 8372 TGACCACTATACTACCGAGGATTGAA 8397 >seq772 Length=154466 Score = 111 bits (122), Expect = 2e-19 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||| | ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 148472 TTTTTTAAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 148413 Query 57052 ACATACTCACCACTATACTACCGAGGATTGA 57082 ||||| ||||||||||||||||||||||| Sbjct 148412 GGATACTGACCACTATACTACCGAGGATTGA 148382 >seq45 Length=1118719 Score = 109 bits (120), Expect = 6e-19 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 183627 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 183686 Query 57058 TCACCACTATACTACCGAGGATTGA 57082 | ||||||||||||||||||||||| Sbjct 183687 TGACCACTATACTACCGAGGATTGA 183711 >seq305 Length=510274 Score = 105 bits (116), Expect = 7e-18 Identities = 79/92 (86%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||| |||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 380635 GAAAAATT--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 380578 Query 57057 CTCACCACTATACTACCGAGGATTGAATATAT 57088 || ||||||||||||||||||||| ||||| Sbjct 380577 CTGACCACTATACTACCGAGGATTATGTATAT 380546 >seq4 Length=1754129 Score = 105 bits (116), Expect = 7e-18 Identities = 83/97 (86%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 601195 ATTAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 601254 Query 57055 TACTCACCACTATACTACCGAGGAT-TGAATA-TATA 57089 |||| |||||||||||||||||||| |||||| |||| Sbjct 601255 TACTGACCACTATACTACCGAGGATATGAATACTATA 601291 >seq25 Length=1185957 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 780480 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 780421 Query 57058 TCACCACTATACTACCGAGGATTGA 57082 | ||||||||||||||||||||||| Sbjct 780420 TGACCACTATACTACCGAGGATTGA 780396 >seq53 Length=807806 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 122480 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 122421 Query 57066 ATACTACCGAGGAT 57079 |||||||||||||| Sbjct 122420 ATACTACCGAGGAT 122407 >seq8065 Length=22102 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | ||||||||||||||| | |||| |||||||| || |||||||| | Sbjct 20205 ACCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCCTTTTGGATGTTGTAATCGGA 20146 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || ||| | | | || || || ||||| || || || || ||||||| || Sbjct 20145 TAGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAGG 20086 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| |||| | ||| |||| | ||||| | | |||||| | ||||| Sbjct 20085 GATTCCCTCTTTGT-CTTGAATTTTAGCTTTGACATTATCGGTGGTGTCGGAGGGTTCCA 20027 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||||||| | | | | |||||||||| ||||| Sbjct 20026 CTTCAAGGGTGATGGTTTTGTCATTCAATG---TTACAAAGATCTGCAT 19981 >seq1110 Length=140048 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 120855 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 120913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543056049156400