Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq93 118 7e-22 seq5 95.1 8e-15 seq259 87.8 1e-12 seq207 84.2 1e-11 >seq93 Length=855823 Score = 118 bits (130), Expect = 7e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 ||||||||||| | | ||| ||||| || | ||| ||| || || ||||| ||||| Sbjct 276828 TTTCCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCG 276769 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || | || |||| ||||||||||| || || || ||||| ||||| | Sbjct 276768 GATAGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGT 276709 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||||||||| || || ||||||| | || | || || || Sbjct 276708 GGGATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCT 276649 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | ||| || ||||| || || | |||||||||||||||||||||||| Sbjct 276648 ACTTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATT 276596 >seq5 Length=1739417 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| ||||| | ||| |||| |||| |||||| || ||||| Sbjct 582058 TCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTGTTTACCAGCAAAG 581999 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || || || | || | || || ||||| ||||| ||| || | Sbjct 581998 ATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACATTT 581939 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| || | || ||||||||||| ||||| |||||||| Sbjct 581938 TCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTGAGGGTCTTCACG 581879 Query 34971 AAGATCTGCATATTC 34985 || |||||||| ||| Sbjct 581878 AAAATCTGCATCTTC 581864 >seq259 Length=588930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| |||||||| || || ||||| ||| | |||| || | |||||||| ||||| | Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | || ||| || || | || | || || || || ||| || ||||| | Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCCTTGACATTTT 399408 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || | | |||||| || | ||| ||||||||||| || | ||| || |||| Sbjct 399407 CAATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACAA 399348 Query 34972 AGATCTGCATATT 34984 |||||||||| || Sbjct 399347 AGATCTGCATGTT 399335 >seq207 Length=511460 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34764 AACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGT 34823 || ||||| ||||| || | |||| |||||| |||||||||||||| || ||| || Sbjct 361887 AATCTCAATACCAAATGGAGTGTGGATTCTTTTTGAATGTTATAGTCAGATAGGGTTTTG 361946 Query 34824 TCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTC 34867 ||||| || | ||||||||||| || || ||||| ||||| || Sbjct 361947 TCATCTTCTAATTGTTTTCCGGCGAAGATAAGTCGCTGCTGATC 361990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324542264843880