Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq86 127 2e-24 >seq86 Length=611229 Score = 127 bits (140), Expect = 2e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 |||||| |||||||| ||||| | || |||| || || | || |||||||||||||| Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809 Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 | | || |||||||| ||| || || | ||||| ||||| ||||||| |||||| Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 |||||| |||| ||| ||| ||||||| | ||| ||| ||||||| || | |||| | Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929 Query 48791 AAA 48793 ||| Sbjct 234930 AAA 234932 Score = 109 bits (120), Expect = 6e-19 Identities = 166/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 47307 AAAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTA 47366 || |||||| ||||||||| |||||||||||| || | ||||| || || ||||| Sbjct 223849 AACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAGTAAATATTT 223908 Query 47367 CTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGC 47426 |||||||||||| | |||||||| ||||| |||||||| || || || || || ||| Sbjct 223909 GATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAAGCAGTTGGC 223968 Query 47427 ATGGATGCAACTAATAAG-CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNG 47485 || | ||| | ||| ||| ||| | || || | || || | Sbjct 223969 ATAGGTGCCA-TAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCTTTTAATGC 224027 Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCT 47543 | ||||||||| ||||||| ||| ||||||||| | ||||||||| || || ||| Sbjct 224028 TGCCCAATCCCAGAGATCTGTTGGGGTAACATTCCACATATCATATTGTAGGATACCT 224085 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 || || |||||| || ||||||||||| |||| |||| || ||||| || Sbjct 232783 AATCCTGGACATCTGTTCGGACACATCAAACTCCAAGTTCCATCTGATTCTACTCGTCTC 232842 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 |||||| ||| |||||||||||||| ||||||||| | || ||| | ||||| || Sbjct 232843 ATAAATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTT 232902 Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 || ||||| |||| | || | ||| || | ||||| ||||||||||||| ||||| Sbjct 232903 CCCGTATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAA 232962 Query 48333 ATTGC 48337 || || Sbjct 232963 ATAGC 232967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561946596479400