Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq86 127 2e-24
>seq86
Length=611229
Score = 127 bits (140), Expect = 2e-24
Identities = 138/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670
|||||| |||||||| ||||| | || |||| || || | || ||||||||||||||
Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809
Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730
| | || |||||||| ||| || || | ||||| ||||| ||||||| ||||||
Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869
Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790
|||||| |||| ||| ||| ||||||| | ||| ||| ||||||| || | |||| |
Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929
Query 48791 AAA 48793
|||
Sbjct 234930 AAA 234932
Score = 109 bits (120), Expect = 6e-19
Identities = 166/238 (70%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 47307 AAAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTA 47366
|| |||||| ||||||||| |||||||||||| || | ||||| || || |||||
Sbjct 223849 AACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAGTAAATATTT 223908
Query 47367 CTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGC 47426
|||||||||||| | |||||||| ||||| |||||||| || || || || || |||
Sbjct 223909 GATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAAGCAGTTGGC 223968
Query 47427 ATGGATGCAACTAATAAG-CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNG 47485
|| | ||| | ||| ||| ||| | || || | || || |
Sbjct 223969 ATAGGTGCCA-TAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCTTTTAATGC 224027
Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCT 47543
| ||||||||| ||||||| ||| ||||||||| | ||||||||| || || |||
Sbjct 224028 TGCCCAATCCCAGAGATCTGTTGGGGTAACATTCCACATATCATATTGTAGGATACCT 224085
Score = 104 bits (114), Expect = 3e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212
|| || |||||| || ||||||||||| |||| |||| || ||||| ||
Sbjct 232783 AATCCTGGACATCTGTTCGGACACATCAAACTCCAAGTTCCATCTGATTCTACTCGTCTC 232842
Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272
|||||| ||| |||||||||||||| ||||||||| | || ||| | ||||| ||
Sbjct 232843 ATAAATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTT 232902
Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332
|| ||||| |||| | || | ||| || | ||||| ||||||||||||| |||||
Sbjct 232903 CCCGTATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAA 232962
Query 48333 ATTGC 48337
|| ||
Sbjct 232963 ATAGC 232967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561946596479400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |