Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq259 131 3e-25
seq5 127 4e-24
seq93 109 1e-18
seq207 91.5 3e-13
>seq259
Length=588930
Score = 131 bits (144), Expect = 3e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || ||||| || | |||| | |||| || |||||||| || |||||||| |||||
Sbjct 399519 ATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGATCAATCTT 399460
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|||||||||||||| ||||||||||||||||| |||||| || ||||| ||||
Sbjct 399459 TGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTG 399400
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| | || || || || || |||||||| || || || ||||| | ||| ||||||
Sbjct 399399 TCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACAAAGATCTGC 399340
Query 192535 ATTTT 192539
|| ||
Sbjct 399339 ATGTT 399335
>seq5
Length=1739417
Score = 127 bits (140), Expect = 4e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || || || || | || ||| |||| ||||| ||||||||||||||||| || | |
Sbjct 582049 ATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTGTTTACCAGCAAAGATCAAACGC 581990
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|||||||| ||||| || |||||||| ||||| || || ||||||||| ||||
Sbjct 581989 TGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCGATAGTG 581930
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || | ||| ||||| | |||||||||||| || || | || || | || ||||||
Sbjct 581929 TCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTGAGGGTCTTCACGAAAATCTGC 581870
Query 192535 ATTTT 192539
|| ||
Sbjct 581869 ATCTT 581865
>seq93
Length=855823
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
|| || || ||||| || || ||||| | || | || || ||| || || || |||
Sbjct 276825 CCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAT 276766
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| || || | || ||||||||||| || || || || | | ||||| || |||||
Sbjct 276765 AGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGG 276706
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
||||| || || ||||| |||||| ||| || || || | ||||| | |||||||
Sbjct 276705 ATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTACT 276646
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || || ||||| ||||| || || || | ||| |||||||| ||
Sbjct 276645 TCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATT 276596
>seq207
Length=511460
Score = 91.5 bits (100), Expect = 3e-13
Identities = 88/112 (79%), Gaps = 1/112 (1%)
Strand=Plus/Plus
Query 192429 TATT-CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
|||| |||||||| ||||| || ||| ||| ||||| ||||||||||| | ||| |
Sbjct 363942 TATTACCTTCTTTGTCTTGAATCTTAGATTTGACATTTTCAATAGAATCTGATGGTTCAA 364001
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|||| || || || ||||| || ||||||||||| | ||| || ||||||||
Sbjct 364002 CTTCAAGGGTGATAGTTTTCCCTGTTAATGTTTTCACAAAAATTTGCATTTT 364053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984188813889750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |