Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq259 131 3e-25 seq5 127 4e-24 seq93 109 1e-18 seq207 91.5 3e-13 >seq259 Length=588930 Score = 131 bits (144), Expect = 3e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||| || | |||| | |||| || |||||||| || |||||||| ||||| Sbjct 399519 ATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGATCAATCTT 399460 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||||||||| ||||||||||||||||| |||||| || ||||| |||| Sbjct 399459 TGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTG 399400 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || | || || || || || |||||||| || || || ||||| | ||| |||||| Sbjct 399399 TCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACAAAGATCTGC 399340 Query 192535 ATTTT 192539 || || Sbjct 399339 ATGTT 399335 >seq5 Length=1739417 Score = 127 bits (140), Expect = 4e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || || || | || ||| |||| ||||| ||||||||||||||||| || | | Sbjct 582049 ATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTGTTTACCAGCAAAGATCAAACGC 581990 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| ||||| || |||||||| ||||| || || ||||||||| |||| Sbjct 581989 TGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCGATAGTG 581930 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| ||||| | |||||||||||| || || | || || | || |||||| Sbjct 581929 TCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTGAGGGTCTTCACGAAAATCTGC 581870 Query 192535 ATTTT 192539 || || Sbjct 581869 ATCTT 581865 >seq93 Length=855823 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || || ||||| || || ||||| | || | || || ||| || || || ||| Sbjct 276825 CCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAT 276766 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || | || ||||||||||| || || || || | | ||||| || ||||| Sbjct 276765 AGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGG 276706 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| || || ||||| |||||| ||| || || || | ||||| | ||||||| Sbjct 276705 ATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTACT 276646 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| ||||| || || || | ||| |||||||| || Sbjct 276645 TCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATT 276596 >seq207 Length=511460 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 192429 TATT-CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 |||| |||||||| ||||| || ||| ||| ||||| ||||||||||| | ||| | Sbjct 363942 TATTACCTTCTTTGTCTTGAATCTTAGATTTGACATTTTCAATAGAATCTGATGGTTCAA 364001 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| || || || ||||| || ||||||||||| | ||| || |||||||| Sbjct 364002 CTTCAAGGGTGATAGTTTTCCCTGTTAATGTTTTCACAAAAATTTGCATTTT 364053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984188813889750