Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq93 149 6e-31 seq5 147 2e-30 seq259 118 1e-21 seq8065 116 3e-21 seq8572 93.3 4e-14 >seq93 Length=855823 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || ||||| || || || ||||||||| || | Sbjct 276599 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACCCTCA 276658 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||||||||| || ||||| || ||||| || Sbjct 276659 GACACCATCGAGAACGTCAAAGCTAAA-ATCCAAGACAAGGAGGGAATCCCACCCGACCA 276717 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| |||| || ||||| ||||| ||||||| | | | | || || || || Sbjct 276718 ACAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTACAA 276777 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| ||||||||||| || || || ||||||||||| Sbjct 276778 CATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCG 276813 >seq5 Length=1739417 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || ||||| ||||| ||||| | ||||| ||| | | Sbjct 581867 GATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCTTC 581926 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| |||||| |||||||||||||||||||| || || |||||||| Sbjct 581927 CGACACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCACCCGATCA 581986 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| |||||||||||||| || |||||| |||| ||| | | | ||||| || || Sbjct 581987 ACAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTACAA 582046 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 |||||| || || || || || || Sbjct 582047 CATTCAGAAAGAGTCCACCCTCCA 582070 >seq259 Length=588930 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || ||||| || || || || || || | | | Sbjct 399338 ATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCCTAGC 399397 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || ||||| ||||||||||| || || |||||| Sbjct 399398 GACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAA 399457 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||| || ||||| | || ||| |||| | |||||||| ||| Sbjct 399458 CAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTACAAC 399517 Query 24884 ATTCAAAA 24891 |||||||| Sbjct 399518 ATTCAAAA 399525 >seq8065 Length=22102 Score = 116 bits (128), Expect = 3e-21 Identities = 159/219 (73%), Gaps = 11/219 (5%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||| | | | ||||| || || || ||||| ||| || || Sbjct 19981 ATGCAGATCTTTGT---AACATTGAATGACAAAACCATCACCCTTGAAGTGGAACCCTCC 20037 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| || | || ||| || || ||||||||||| ||||| |||||||| ||| Sbjct 20038 GACACCACCGATAATGTCAAAGCTAAAATTCAAGACAAAGAGGGAATCCCTCCCGACCAA 20097 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGG--AGGATTCGA--GAAACATGTCAGATTA 24879 |||||| |||| || || || ||||| ||| || ||| | | | | || ||||| Sbjct 20098 CAACGTCTGATTTTCGCGGGAAAACATTTGGTTAG----CGACCGTACCCTATCCGATTA 20153 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||||||||| ||| | || ||||||||||| Sbjct 20154 CAACATCCAAAAGGAATCCACAATTCATTTGGTGTTGCG 20192 >seq8572 Length=13345 Score = 93.3 bits (102), Expect = 4e-14 Identities = 295/452 (65%), Gaps = 9/452 (2%) Strand=Plus/Minus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 ||||||||||| ||||| |||||||| || || | |||||||| |||| || |||||| Sbjct 8698 TATTCGACAATCTCGGCGCACAAATTGCTGCATTGAATCGTACCCAAATGTTTCTGATTG 8639 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||| |||||||| || |||||||| | |||||| || ||||| | ||| | Sbjct 8638 GATTTGTAATTACAAGCGTCCTTGTAAAGGACGTACGGTCCTCCCGTTTCTATTTGCGCA 8579 Query 139243 TCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGC 139302 || | |||| | | | | ||| | || | || || || |||||| || | | Sbjct 8578 TCGACAATGGCTCTCCAGAGGTCTCGTGCATTTACTTTGCGAACGTAATTGCCGGCCGCC 8519 Query 139303 TCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATC--GCGA 139359 ||||| | | |||| | || || ||||| ||||| | | ||| | |||| Sbjct 8518 TCGTATTCTGCGTACTGGCGTTCAAATTCGTT-GCCGTATATGAGATGAAGCCCGGGCGA 8460 Query 139360 CACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGA 139419 ||| || |||||||| ||| | |||| | ||||||| |||| || Sbjct 8459 TCGATGT--GGGCACATGAGACTCCACATTTCGTTGTTTTCGACGCGCTTCATAAATTCG 8402 Query 139420 TCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTA 139479 | |||||||| | |||| | | || ||||||||| | | ||| | || | || Sbjct 8401 TTTGGAATCCAGAGAGCGTAGAACAGGTCGCGCGCCCGACTTTGTTCGGCGCCAGTATTT 8342 Query 139480 CGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 ||| | || || | ||||||| ||| |||||||| ||||| | || | ||| | Sbjct 8341 TTTTTAAGGTCCAGAACGTCAAAAATGTCGGCGTGCCACGGTTCGATGTACACGGCAAAC 8282 Query 139540 GCGCCTTTCCGTTTG---CCACCTTGATCGAC 139568 ||||| |||||| || ||||| ||||| Sbjct 8281 GCGCCCGGTCGTTTGTTTCCTCCTTGGTCGAC 8250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449767776423800