Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3349 178 1e-39 seq259 96.9 3e-15 seq5 86.0 5e-12 >seq3349 Length=56643 Score = 178 bits (196), Expect = 1e-39 Identities = 296/428 (69%), Gaps = 0/428 (0%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || |||||||||| || || || || || || || || || ||| || ||| || Sbjct 25649 GGAGGGTTTTTCAAGATAAAAGTATTTAGTTTGTGATTAAATTGGAGCAGACCATGAAAA 25708 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 || |||||||| ||||| || ||| || || ||||| || || || | || ||| Sbjct 25709 CCACATGCTTTACAGCCTTGTTGAATAGTGCCTTTCTTAGCAGATACAATCAAATCTGTC 25768 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 ||||| || || || || ||||| | |||||||| | |||||| ||||| | ||||| Sbjct 25769 TCCGGATTATCGCACTCAGGACATAGGACAAACTTTCTGATGAATCCATCCAAGAGGTCT 25828 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACC 34443 || | || | || || || |||||||| || ||| || ||||| | ||| | Sbjct 25829 TGCAGTTTGTTGACATCATGAGAACCGTTGACTATATATCTGTCATTTTTATGATCAAGT 25888 Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCA 34503 | || || || |||| || || || || ||||| || || || | | ||||| ||| Sbjct 25889 TTGGTCTGAGCACCCAATTCACATCCAAAATACTTGGTGGGATATGTTGGAGGACGCCCA 25948 Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 | || ||||| | || | ||| ||||| || || || ||||| || ||||| || ||| Sbjct 25949 ATTGCTTTGGCAACCTCAGCCATATTGACAATAACTGTTTTGATACCATTGCCTTTACCT 26008 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGG 34623 || ||||| || | | ||||||||||| || || || || ||||| ||||| ||| Sbjct 26009 TCCACCTTAGCTTGAAGCCTAGGCATTTTGTAACGATAAAATGCATCCGCAACATTACGG 26068 Query 34624 TTAACGTT 34631 || ||||| Sbjct 26069 TTCACGTT 26076 >seq259 Length=588930 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || |||||||||||||| || || |||||||| ||| | || |||||| Sbjct 399335 AACATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCCT 399394 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | || || || ||| || |||||||| | || ||| Sbjct 399395 AGCGACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGAT 399454 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | ||| || ||||| | || |||| ||||| | | |||||| Sbjct 399455 CAACAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTAC 399514 Query 110450 AACATTCAAAAAG 110462 ||||||||||||| Sbjct 399515 AACATTCAAAAAG 399527 >seq5 Length=1739417 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || || | ||||| ||||||||||| | ||| || ||| Sbjct 581865 AAGATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCT 581924 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| ||| | |||||| ||||| |||||||||||| | || ||| Sbjct 581925 TCCGACACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCACCCGAT 581984 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| | | || | ||| ||||||||| |||| |||| | || | | || ||| Sbjct 581985 CAACAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTAC 582044 Query 110450 AACATTCAAAAAGAATCTAC 110469 |||||||| ||||| || || Sbjct 582045 AACATTCAGAAAGAGTCCAC 582064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412725447660905