Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq93 154 1e-32 seq259 131 1e-25 seq5 125 6e-24 seq8065 118 8e-22 seq207 93.3 3e-14 >seq93 Length=855823 Score = 154 bits (170), Expect = 1e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 29550 TTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTT 29609 |||| | | ||||||||| | ||||| ||||||||| || |||||||| ||||| ||||| Sbjct 276835 TTATTGCTTTCCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTT 276776 Query 29610 ATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTG 29669 || || | | ||| || || || | |||||| || || | |||| | ||| || Sbjct 276775 GTAGTCGGATAGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTG 276716 Query 29670 ATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 || || || || ||||| |||||||| | ||| |||||| | || | ||||| || Sbjct 276715 GTCGGGTGGGATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGA 276656 Query 29730 AAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||||| || || ||||||||||| || || || ||||| |||||||| || Sbjct 276655 GGGTTCTACTTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATT 276596 >seq259 Length=588930 Score = 131 bits (144), Expect = 1e-25 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||||||||| ||||| | || || | ||| || | |||||| || ||| | | Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 |||||||||| ||||| || ||||| || ||||| ||||| |||||| | |||||| || Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTG-AATTTTAGCCTTGACATTT 399409 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | |||||| | | || || ||||| || || ||||| || || || ||||| ||| Sbjct 399408 TCAATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACA 399349 Query 29776 AATATCTGCATTTT 29789 || |||||||| || Sbjct 399348 AAGATCTGCATGTT 399335 >seq5 Length=1739417 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 ||| || ||||| ||||| |||||||| || || | || || || ||| || | || Sbjct 582071 ATGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTG 582012 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| |||||| | ||||| | || ||||| || ||||| || ||||||||||| | || Sbjct 582011 TTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTT 581952 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 ||| ||| |||| | |||||| ||| |||| ||||| | ||| || ||||| || || Sbjct 581951 GGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGT 581892 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | ||| || || || |||||||| || Sbjct 581891 GAGGGTCTTCACGAAAATCTGCATCTT 581865 >seq8065 Length=22102 Score = 118 bits (130), Expect = 8e-22 Identities = 165/228 (72%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||||| ||||||||||| |||||||| ||||| ||||| ||||| | Sbjct 20204 CCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCCTTTTGGATGTTGTAATCGGAT 20145 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || | | | ||||| || || | |||| | ||| || || || || Sbjct 20144 AGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAGGG 20085 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||||||||| |||||| | ||||||| | || ||||| || |||| || Sbjct 20084 ATTCCCTCTTTGTCTTG-AATTTTAGCTTTGACATTATCGGTGGTGTCGGAGGGTTCCAC 20026 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || |||||| || | || ||| ||||| |||||||| Sbjct 20025 TTCAAGGGTGATGGTTTTGTCATTCAATGTT---ACAAAGATCTGCAT 19981 >seq207 Length=511460 Score = 93.3 bits (102), Expect = 3e-14 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||| ||||||||||| ||| || | ||||||| |||| | || || || |||| ||| Sbjct 363945 TACCTTCTTTGTCTTG-AATCTTAGATTTGACATTTTCAATAGAATCTGATGGTTCAACT 364003 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || |||||||| || ||||| ||||| ||||| || |||||||| Sbjct 364004 TCAAGGGTGATAGTTTTCCCTGTTAATGTTTTCACAAAAATTTGCATTTT 364053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385110819179985