Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq93 154 1e-32
seq259 131 1e-25
seq5 125 6e-24
seq8065 118 8e-22
seq207 93.3 3e-14
>seq93
Length=855823
Score = 154 bits (170), Expect = 1e-32
Identities = 178/240 (74%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 29550 TTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTT 29609
|||| | | ||||||||| | ||||| ||||||||| || |||||||| ||||| |||||
Sbjct 276835 TTATTGCTTTCCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTT 276776
Query 29610 ATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTG 29669
|| || | | ||| || || || | |||||| || || | |||| | ||| ||
Sbjct 276775 GTAGTCGGATAGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTG 276716
Query 29670 ATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729
|| || || || ||||| |||||||| | ||| |||||| | || | ||||| ||
Sbjct 276715 GTCGGGTGGGATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGA 276656
Query 29730 AAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
||||||||||||| || || ||||||||||| || || || ||||| |||||||| ||
Sbjct 276655 GGGTTCTACTTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATT 276596
>seq259
Length=588930
Score = 131 bits (144), Expect = 1e-25
Identities = 147/194 (76%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656
||||||||||||| ||||| | || || | ||| || | |||||| || ||| | |
Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468
Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715
|||||||||| ||||| || ||||| || ||||| ||||| |||||| | |||||| ||
Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTG-AATTTTAGCCTTGACATTT 399409
Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775
|| | |||||| | | || || ||||| || || ||||| || || || ||||| |||
Sbjct 399408 TCAATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACA 399349
Query 29776 AATATCTGCATTTT 29789
|| |||||||| ||
Sbjct 399348 AAGATCTGCATGTT 399335
>seq5
Length=1739417
Score = 125 bits (138), Expect = 6e-24
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
||| || ||||| ||||| |||||||| || || | || || || ||| || | ||
Sbjct 582071 ATGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTG 582012
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
||| |||||| | ||||| | || ||||| || ||||| || ||||||||||| | ||
Sbjct 582011 TTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTT 581952
Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
||| ||| |||| | |||||| ||| |||| ||||| | ||| || ||||| || ||
Sbjct 581951 GGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGT 581892
Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789
| ||| || || || |||||||| ||
Sbjct 581891 GAGGGTCTTCACGAAAATCTGCATCTT 581865
>seq8065
Length=22102
Score = 118 bits (130), Expect = 8e-22
Identities = 165/228 (72%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||||| ||||||||||| |||||||| ||||| ||||| ||||| |
Sbjct 20204 CCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCCTTTTGGATGTTGTAATCGGAT 20145
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || | | | ||||| || || | |||| | ||| || || || ||
Sbjct 20144 AGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAGGG 20085
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| |||||||||||||| |||||| | ||||||| | || ||||| || |||| ||
Sbjct 20084 ATTCCCTCTTTGTCTTG-AATTTTAGCTTTGACATTATCGGTGGTGTCGGAGGGTTCCAC 20026
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||| || || |||||| || | || ||| ||||| ||||||||
Sbjct 20025 TTCAAGGGTGATGGTTTTGTCATTCAATGTT---ACAAAGATCTGCAT 19981
>seq207
Length=511460
Score = 93.3 bits (102), Expect = 3e-14
Identities = 88/110 (80%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|||| ||||||||||| ||| || | ||||||| |||| | || || || |||| |||
Sbjct 363945 TACCTTCTTTGTCTTG-AATCTTAGATTTGACATTTTCAATAGAATCTGATGGTTCAACT 364003
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
||||| || |||||||| || ||||| ||||| ||||| || ||||||||
Sbjct 364004 TCAAGGGTGATAGTTTTCCCTGTTAATGTTTTCACAAAAATTTGCATTTT 364053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385110819179985
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |