Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1254 91.5 3e-13 seq2824 87.8 4e-12 seq86 84.2 5e-11 >seq1254 Length=150002 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAAGAGGGTCG 305004 |||| ||||| | |||| |||| | ||| | || | | | ||||||||||| || || Sbjct 107085 CAAAAGTCTGGAAAACCTCTAAAAGCTATCAAAGCCAGAC-TCAAAGGTAAAGAAGGACG 107027 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 ||||||||| ||||||||||||||||||||||| ||| || ||| ||| || || || Sbjct 107026 TATTCGAGGAAATCTAATGGGAAAACGTGTTGACTTTTCCGCTCGAACTGTCATTACGCC 106967 Query 305065 TGAT 305068 |||| Sbjct 106966 TGAT 106963 >seq2824 Length=93784 Score = 87.8 bits (96), Expect = 4e-12 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||| ||| | |||||| | |||||| | ||| ||| ||| | |||||| | Sbjct 25316 TGTTTAATCGACAACCAAGTTTACATAAACTTAGTATTATGTGCCATCGGGCCAAAGTTT 25375 Query 305394 TATCTGGATTGA-CATTTCGATTAAATGTAAGTGC--TTGTACGCCTTATAATGCGGATT 305450 || || || || |||||||||| |||| ||||| || || ||||| ||||| || | Sbjct 25376 TACCTC-ATCGAACATTTCGATTCAATG--AGTGCGTATGCACTCCTTACAATGCAGACT 25432 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||| |||||||||||||| ||| |||||||| Sbjct 25433 TTGATGGTGATGAAATGAATATTCATTTACCTCAA 25467 >seq86 Length=611229 Score = 84.2 bits (92), Expect = 5e-11 Identities = 171/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 |||||||| ||| | ||||| |||||| |||||| |||||||| ||||| || |||| Sbjct 232970 TTTGCTATTTATTTGGAACCATGGCATGGAGATATTTTTGAATTTTTAGA--TT--TAAA 232915 Query 110817 AATCAA----GGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTC 110872 || || ||| ||||| ||||| || |||||||||||||| | ||||| | Sbjct 232914 AAAGAATACGGGAAAAGAAGAGTTTAGAGCTCGAGATTTATTTTATGCTCTTTGGATACC 232855 Query 110873 AGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCG 110932 ||| ||| |||| ||| || || | |||| | ||| | | |||||||| | | Sbjct 232854 CGATGAATTTATGAGACGAGTAGAATCAGATGGAACTTGGAGTTTGATGTGTCCGAACAG 232795 Query 110933 TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGA 110992 | ||| || | ||| | || | || ||||| | || ||| |||||| || Sbjct 232794 ATGTCCAGGATTGAGCGATTGCTGGGGTGACGAATTTGATGCACTCTACAGAAAATACGA 232735 Query 110993 AAAAGAAGGCAA 111004 | ||||||| || Sbjct 232734 AGAAGAAGGTAA 232723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186461768589685