Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq93 127 1e-24 seq259 123 2e-23 seq8065 114 8e-21 seq5 93.3 3e-14 >seq93 Length=855823 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| ||||||||||| || ||| || ||||| |||||||| ||||| Sbjct 276825 CCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAT 276766 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| ||||||||||||||||| ||||||| ||| || || || | || Sbjct 276765 AGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGG 276706 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||||| | || || | || | |||||| | ||| || Sbjct 276705 ATTCCCTCCTTGTCTTGGATTTT-AGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTAC 276647 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 |||| ||||| ||||| || || || || || ||||||||||||||| || Sbjct 276646 TTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATTT 276595 >seq259 Length=588930 Score = 123 bits (136), Expect = 2e-23 Identities = 156/210 (74%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| ||||||||||| || || || | | | || || ||||||||||| ||||| | Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| | || ||||| | || | |||||||| || |||||| | | |||| Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTT-AGCCTTGACATTT 399409 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | |||||||| | || || |||| ||||| ||||| ||||| || ||||| ||| Sbjct 399408 TCAATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGACA 399349 Query 33739 AAGATCTGCATAGTT---GGTGTGTTTATC 33765 ||||||||||| ||| ||||| |||||| Sbjct 399348 AAGATCTGCAT-GTTGACGGTGTATTTATC 399320 >seq8065 Length=22102 Score = 114 bits (126), Expect = 8e-21 Identities = 167/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| | ||| ||||||||||| | ||| || ||||| |||||||||||||| Sbjct 20205 ACCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCCTTTTGGATGTTGTAATCGGA 20146 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || ||| |||| |||||||| || ||||||| ||| || || || | || Sbjct 20145 TAGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAGG 20086 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| |||||| | || |||| || ||||||| | ||||| Sbjct 20085 GATTCCCTCTTTGTCTTGAATTTT-AGCTTTGACATTATCGGTGGTGTCGGAGGGTTCCA 20027 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 | |||| ||||| ||||| | | || | ||||||||||||||||| || Sbjct 20026 CTTCAAGGGTGATGGTTTTGTCATTCAA---TGTTACAAAGATCTGCATAATT 19977 >seq5 Length=1739417 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| |||||| || |||||||| || || || || ||| | || ||||| || Sbjct 582071 ATGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTG 582012 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || ||||| ||||||||||| ||||| | || | ||||||||||| || || Sbjct 582011 TTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTT 581952 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | || |||| || | |||||| | ||| || || | || || ||||| || | Sbjct 581951 -GGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGG 581893 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || || || |||||||| Sbjct 581892 TGAGGGTCTTCACGAAAATCTGCAT 581868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328611519643200