Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq86 167 3e-36 >seq86 Length=611229 Score = 167 bits (184), Expect = 3e-36 Identities = 186/246 (76%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 ||| |||| | ||||| ||||||| | ||||||||| || || || ||||| |||| | Sbjct 223840 AAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAG 223899 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 |||||||| ||||||||||| | |||||||| ||||| | |||||| || || || Sbjct 223900 TAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAA 223959 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 ||||||||||||||||||| | | | ||| | || || ||| ||||||| ||| Sbjct 223960 GCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCT 224019 Query 68869 TTTAGATG-TTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927 |||| ||| | ||||||||| ||||| | ||| ||||||||| | ||| |||||||| Sbjct 224020 TTTA-ATGCTGCCCAATCCCAGAGATCTGTTGGGGTAACATTCCACATATCATATTGTAG 224078 Query 68928 AATTCC 68933 || || Sbjct 224079 GATACC 224084 Score = 127 bits (140), Expect = 3e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 |||||| || ||||| || || ||||| |||||||||| || | ||| ||||||||||| Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809 Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 |||||| |||||||| ||| ||||| | | || |||||||||||||| ||||| Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181 || ||| || |||| ||| ||||||| | || ||| |||||| ||| | ||| | Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929 Query 70182 AAA 70184 ||| Sbjct 234930 AAA 234932 Score = 122 bits (134), Expect = 1e-22 Identities = 181/255 (71%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 |||| ||| |||| | | || || || ||||| || ||||| ||| |||||| Sbjct 232729 TCTTCTTCGTATTTTCTGTAGAGTGCATCAAATTCGTCACCCCAGCAATCGCTCAATCCT 232788 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATC--ATCCTTAACTCGTTTCATAA 69607 |||||| || ||||||||||| ||| |||| || || |||||| |||||| Sbjct 232789 GGACATCTGTTCGGACACATCAAACTCCAAGTTCCATCTGATTCT--ACTCGTCTCATAA 232846 Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667 || |||||| ||||||||||| ||| | ||||| | |||| ||||| ||||| | Sbjct 232847 ATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTTCCCG 232906 Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 |||| ||||| | ||| | ||| || | |||||| |||||||||||| | ||| || | Sbjct 232907 TATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAAATAG 232966 Query 69728 CCATGACTCCCGGTC 69742 | | |||| |||| Sbjct 232967 CAAAAGCTCCGGGTC 232981 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 70344 tttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTC 70403 |||||| ||||| || ||||||||||| | || ||||| || || |||| ||| || || Sbjct 236227 TTTTTTAGTTTCTTTATGTAAATTTGAAACAGCAATTCTCGCAGCAAGAACAGCGTAATC 236286 Query 70404 AGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGT 70463 ||||||| |||||| || |||||| |||| || ||||| |||| |||| | || Sbjct 236287 GGGATGTTTTGTAGTCATAGAAGCTGCAGTTTCAGCTGCTAAATTATCCAATTGAACTGT 236346 Query 70464 TGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 70498 ||| || || |||| |||| || ||||||| Sbjct 236347 TGTCACACCTGGGTATAAACCTTTGATTACTTTCA 236381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686710583879400