Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1351 161 8e-35 seq192 111 1e-19 >seq1351 Length=133559 Score = 161 bits (178), Expect = 8e-35 Identities = 241/342 (70%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 40862 TGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA 40921 || |||||| | ||||| || ||||| ||||| | ||| |||| ||||| ||||| | Sbjct 104226 TGCAGGTGACTTAGGTCCCGTATATGGTTTTCAATGGCGTCATTACGGAGCTGAATATAA 104285 Query 40922 CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATAC 40981 |||| ||||||| || ||||||||| |||||| | || | || | || Sbjct 104286 AGACATGTTTACTGATTACACTGGTAAAGGAATAGATCAACTTCAAGATATCATCAACAC 104345 Query 40982 GATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 |||||| | |||| || || || || ||| |||| || ||||| || | || | Sbjct 104346 AATTAAAAACAATCCAAATGATCGTCGAATCATAATGTGTGCTTGGAATCCTATCGATCT 104405 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 || |||||| | ||||||||||||| ||| |||||| || || |||| | | Sbjct 104406 ACCAAAAATGGCACTTCCACCTTGTCATTGTTTAGCTCAGTTCTATGTAGCTAATGATAA 104465 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 | | || |||||||| ||||||||||| | ||| ||||| |||| || || ||||| || Sbjct 104466 ATTATCGTGTCAATTATATCAAAGATCTGCTGATATGGGTTTAGGTGTGCCATTTAATAT 104525 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || |||||| | | || || |||||||||||||| || || Sbjct 104526 TGCTAGTTATTCATTACTGACTTATATGATTGCACATGTCAC 104567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || || |||||||||| | | ||||||||||| ||| |||||| | | ||| Sbjct 103123 TTTCCATTACTCACTACAAAAAGAGTATTTTGGAAAGGAGTTGTTGAAGAATTACTTTGG 103182 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||||||||||||| ||| ||||| ||| || | || || | ||| || | |||||| || Sbjct 103183 TTTATCAAAGGTTCTACAAATGCGAAGGAACTTTCTGATAAAGGTGTAAAAATTTGGGAT 103242 Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGT 40868 | | ||| ||| | ||| ||| | || |||||| |||| | |||||| Sbjct 103243 CCAAATAGTACTAGAGAATACTTGGATTCAATTGGATTAACTAATAGACAAGAAGGT 103299 >seq192 Length=450475 Score = 111 bits (122), Expect = 1e-19 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA--- 19608 ||||| || ||| | || ||| | || || |||||||| |||||| ||||||| | Sbjct 382568 CACATAATTATATTTGACGAAATCGATGCTATCTGTAAAGCAAGAGGATCTGGTGGAGGA 382509 Query 19609 ---AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAAC 19665 | || || ||||||||||| |||||||| | ||||| ||| | ||||| ||| | Sbjct 382508 AGCACCGGCGTTCATGACACTGTGGTCAATCAGTTGCTGTCCAAAATTGACGGCGTTGAA 382449 Query 19666 CAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCC 19725 || |||| |||||||| |||||||| ||||| ||| ||| || | || || || Sbjct 382448 CAGTTGAACAATATTTTGGTTATTGGAATGACAAATCGACGAGATATGATCGATGAAGCA 382389 Query 19726 TTATTACGACCCGGTCGGTTGGA 19748 ||||| ||||||| || || || Sbjct 382388 TTATTGAGACCCGGACGTTTAGA 382366 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 || |||||||| || || || | || ||||| || || ||| || ||||| ||| Sbjct 388224 GGCTGTAAACACGTCAAAGGTATTCTACTGTATGGTCCCCCTGGTACGGGTAAAACTTTA 388165 Query 19390 ATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCT--CCCAAAATTGTAAATGGTC 19447 || || || || || || || | ||| || || | || ||||| || ||||||| Sbjct 388164 ATGGCTCGACAAATTGGTCAAATG-TTA-AATGCACGCGAACCAAAAATAGTGAATGGTC 388107 Query 19448 CTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTG 19507 || |||| ||| | |||||||| ||| |||| |||| ||| || |||| |||||||||| Sbjct 388106 CTCAAATTTTAGACAAATATGTTGGTGAATCAGAAGCAAACGTGAGACGATTGTTTGCTG 388047 Query 19508 ACGCTGAAGAAGAACAAAAA 19527 |||| || |||||| ||||| Sbjct 388046 ACGCGGAGGAAGAAGAAAAA 388027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397344176375425