Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq93 123 2e-23 seq86 120 3e-22 seq5 95.1 1e-14 >seq93 Length=855823 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || || || ||||| || ||||||||| | | | || || Sbjct 276813 CGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGATAGGGTACGGCCG 276754 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || | ||||| |||||| |||| ||||| ||||| || || || | ||||| || Sbjct 276753 TCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGGATTCCCTCCTTG 276694 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || ||| | | | || | ||||||| || ||| ||||| || || || Sbjct 276693 TCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTACTTCAAGGGTGATT 276634 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| |||| ||| ||||||||||| |||||| Sbjct 276633 GTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATA 276598 >seq86 Length=611229 Score = 120 bits (132), Expect = 3e-22 Identities = 175/247 (71%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||| | | || ||||| ||||| | |||||| || || | || || | || | ||| Sbjct 223842 ATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAGTA 223901 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 ||| || || | |||||||| ||||| ||||| || || ||||||||||| | || Sbjct 223902 AATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAAGC 223961 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || ||||| ||||| | ||||||||||||| ||||| |||||||| || Sbjct 223962 AGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCTTT 224021 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974 ||| | |||||||||| ||| || || | ||| |||||||||||| ||||||| Sbjct 224022 TAATGCTGCCCAATCCCAGAGATCTGTTGGGGTAACA---TTCCACATATCATATTGTAG 224078 Query 130975 TATGCCT 130981 || ||| Sbjct 224079 GATACCT 224085 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 131640 TCTG-TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTA 131698 |||| ||| ||||| ||||||| ||| || | ||| | || || || | ||||| | Sbjct 232825 TCTGATTCTACTCGTCTCATAAATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGA 232884 Query 131699 GCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCA 131758 ||| | ||||||| | ||| || | ||||| |||| |||||| || ||||| || || Sbjct 232885 GCTCTAAACTCTTCTTTTCCCGTATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCA 232944 Query 131759 TGCCAGGGTTCCAAATA 131775 ||||| ||||||||||| Sbjct 232945 TGCCATGGTTCCAAATA 232961 >seq5 Length=1739417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| |||||||| | | || | ||||| | ||||||||| Sbjct 582064 GTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTGTTTACCA 582005 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | |||||||||||| || || | || ||||| || ||||||| ||| Sbjct 582004 GCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTT 581945 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | | ||||||||| | ||| || | ||| || || || || Sbjct 581944 ACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTGAGGGTC 581885 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 581884 TTCACGAAAATCTGCAT 581868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424814845370520