Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq93 123 2e-23
seq86 120 3e-22
seq5 95.1 1e-14
>seq93
Length=855823
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
||||| |||||||| | || || || ||||| || ||||||||| | | | || ||
Sbjct 276813 CGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGATAGGGTACGGCCG 276754
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| || | ||||| |||||| |||| ||||| ||||| || || || | ||||| ||
Sbjct 276753 TCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGGATTCCCTCCTTG 276694
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| || ||| | | | || | ||||||| || ||| ||||| || || ||
Sbjct 276693 TCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTACTTCAAGGGTGATT 276634
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| |||||| |||| ||| ||||||||||| ||||||
Sbjct 276633 GTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATA 276598
>seq86
Length=611229
Score = 120 bits (132), Expect = 3e-22
Identities = 175/247 (71%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794
|||| | | || ||||| ||||| | |||||| || || | || || | || | |||
Sbjct 223842 ATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAGTA 223901
Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854
||| || || | |||||||| ||||| ||||| || || ||||||||||| | ||
Sbjct 223902 AATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAAGC 223961
Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914
|| ||||| ||||| | ||||||||||||| ||||| |||||||| ||
Sbjct 223962 AGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCTTT 224021
Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974
||| | |||||||||| ||| || || | ||| |||||||||||| |||||||
Sbjct 224022 TAATGCTGCCCAATCCCAGAGATCTGTTGGGGTAACA---TTCCACATATCATATTGTAG 224078
Query 130975 TATGCCT 130981
|| |||
Sbjct 224079 GATACCT 224085
Score = 86.0 bits (94), Expect = 5e-12
Identities = 102/137 (74%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 131640 TCTG-TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTA 131698
|||| ||| ||||| ||||||| ||| || | ||| | || || || | ||||| |
Sbjct 232825 TCTGATTCTACTCGTCTCATAAATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGA 232884
Query 131699 GCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCA 131758
||| | ||||||| | ||| || | ||||| |||| |||||| || ||||| || ||
Sbjct 232885 GCTCTAAACTCTTCTTTTCCCGTATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCA 232944
Query 131759 TGCCAGGGTTCCAAATA 131775
||||| |||||||||||
Sbjct 232945 TGCCATGGTTCCAAATA 232961
>seq5
Length=1739417
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| ||||| |||||||| | | || | ||||| | |||||||||
Sbjct 582064 GTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTGTTTACCA 582005
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || | |||||||||||| || || | || ||||| || ||||||| |||
Sbjct 582004 GCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTT 581945
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| |||| | |||||| | | ||||||||| | ||| || | ||| || || || ||
Sbjct 581944 ACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTGAGGGTC 581885
Query 27231 TTCACAAAGATTTGCAT 27247
||||| || || |||||
Sbjct 581884 TTCACGAAAATCTGCAT 581868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424814845370520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |