Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq93 150 2e-31 seq8065 111 2e-19 seq5 105 8e-18 seq259 100 3e-16 >seq93 Length=855823 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || ||||| || || || ||||| || || | Sbjct 276599 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACCCTCA 276658 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || |||||||| || |||||||||||||| || || ||||| Sbjct 276659 GACACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGACCAA 276718 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || || || ||| | ||||| | ||||||||| | ||||| || Sbjct 276719 CAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTACAAC 276778 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||||||||||||||| || ||| | || |||||||| Sbjct 276779 ATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCGTCT 276816 >seq8065 Length=22102 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | || ||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||| Sbjct 20050 AATGTCAAAGCTAAAATTCAAGACAAAGAGGGAATCCCTCCCGACCAACAACGTCTGATT 20109 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || || || | | || ||||||||| | || || || ||||||||||| Sbjct 20110 TTCGCGGGAAAACATTTGGTTAGCGACCGTACCCTATCCGATTACAACATCCAAAAGGAA 20169 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCT 27623 ||||| ||||| | || |||||||| Sbjct 20170 TCCACAATTCATTTGGTGTTGCGTCT 20195 >seq5 Length=1739417 Score = 105 bits (116), Expect = 8e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || ||||| || || |||||| | || ||||| | Sbjct 581868 ATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 581927 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || || || ||||| || || ||||| || || || Sbjct 581928 GACACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCACCCGATCAA 581987 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||||||||| || | || |||| ||||| || ||||||| || Sbjct 581988 CAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTACAAC 582047 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || || || ||||| || ||||| Sbjct 582048 ATTCAGAAAGAGTCCACCCTCCATCT 582073 >seq259 Length=588930 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || | || || || || || || |||||||||||| | | Sbjct 399338 ATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCCTAGC 399397 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | |||||||||||||| || || || |||||||| || || || Sbjct 399398 GACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAA 399457 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||| || || ||| | || |||| | || || |||| || || Sbjct 399458 CAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTACAAC 399517 Query 27586 GTCCAAAA 27593 | ||||| Sbjct 399518 ATTCAAAA 399525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570145829805200