Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq93 149 4e-31 seq5 113 3e-20 seq259 102 5e-17 seq8065 96.9 2e-15 >seq93 Length=855823 Score = 149 bits (164), Expect = 4e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || |||||||||||||||||||| ||| |||||||| ||||| || || || Sbjct 276825 CCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAT 276766 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | |||||| ||||| || || | ||| |||||||| || || Sbjct 276765 AGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGG 276706 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| ||| | ||| ||| | || |||||| | || || Sbjct 276705 ATTCCCTCCTTGTCTTGGAT-TTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTAC 276647 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| | ||| || ||||| || || || || |||||||| |||||||| || Sbjct 276646 TTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATT 276596 >seq5 Length=1739417 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||| ||| || |||||||| || |||||||| || || | ||||| | || Sbjct 582071 ATGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAACTG 582012 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 |||||| ||||| || ||||||||||| || || || | || || |||||| |||||| Sbjct 582011 TTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATCTT 581952 Query 34623 TTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 ||||| | || ||||| || ||||||| || || ||||| ||||| Sbjct 581951 GGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCGGT 581892 Query 34683 TAACGTTTTCACAAAAATCTGCATGTT 34709 | || ||||| ||||||||||| || Sbjct 581891 GAGGGTCTTCACGAAAATCTGCATCTT 581865 >seq259 Length=588930 Score = 102 bits (112), Expect = 5e-17 Identities = 143/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||||||||| ||||||||||| |||| | ||||| | |||||| || ||||| || Sbjct 399525 TTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGATC 399466 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAA 34637 || | ||||| || || || | ||| || || ||| ||| ||| | || || | Sbjct 399465 AATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCT-TGAATTTTAGCCTTGACATTTTC 399407 Query 34638 AATTGTGTCTTCGCT---CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| ||| ||||| ||| || || | ||| || ||||| || || || ||||| || Sbjct 399406 AATAGTG---TCGCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGAC 399350 Query 34695 AAAAATCTGCATGTTGA 34711 ||| ||||||||||||| Sbjct 399349 AAAGATCTGCATGTTGA 399333 >seq8065 Length=22102 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||||||||||||| | ||| |||||||| ||||| ||||| || Sbjct 20204 CCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCCTTTTGGATGTTGTAATCGGAT 20145 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||| | | ||||| || || || || | ||| |||||||| || || Sbjct 20144 AGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAGGG 20085 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||| |||||| ||| ||| | ||| || || | ||||| | ||||| Sbjct 20084 ATTCCCTCTTTGTCT-TGAATTTTAGCTTTGACATTATCGGTGGTGTCGGAGGGTTCCAC 20026 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| | | || ||| ||||| |||||||| Sbjct 20025 TTCAAGGGTGATGGTTTTGTCATTCAATGTT---ACAAAGATCTGCAT 19981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314641051318805