Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq93 176 4e-39 seq5 149 5e-31 seq8065 138 1e-27 seq259 125 6e-24 >seq93 Length=855823 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| ||||| | || || |||||||| ||||| || Sbjct 276599 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACCCTCA 276658 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| |||||||| || || || |||||||| ||| Sbjct 276659 GACACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGACCAA 276718 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| ||||||||||| ||| | ||| | ||||| |||||| Sbjct 276719 CAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTACAAC 276778 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || ||| | |||||||| |||||| | |||| || Sbjct 276779 ATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCGTCTCAGGGGAGG 276825 >seq5 Length=1739417 Score = 149 bits (164), Expect = 5e-31 Identities = 166/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 26971 TTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTC 27030 |||||| || | | | |||||||| || || || || || ||||| || | |||||| Sbjct 581853 TTTTTATTTCAGAAG--ATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTT 581910 Query 27031 TTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG 27090 | ||||| ||||| |||||| | || || | || ||| || || ||||||||||||| Sbjct 581911 TGGAAGTTGAACCTTCCGACACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAG 581970 Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150 |||| |||||||||||||||||||| || | || || ||||| |||||||| | | Sbjct 581971 GCATTCCACCCGATCAACAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTA 582030 Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 | |||| || ||||||||||| || ||||| ||| | ||| Sbjct 582031 CTCTTTCAGACTACAACATTCAGAAAGAGTCCACCCTCCAT 582071 >seq8065 Length=22102 Score = 138 bits (152), Expect = 1e-27 Identities = 163/219 (74%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||| | ||| | ||| | || || |||||||||||||| ||| Sbjct 19981 ATGCAGATCTTTGTAACAT---TGAATGACAAAACCATCACCCTTGAAGTGGAACCCTCC 20037 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | || | |||||| ||||||||||||||||| || || || ||||| ||| Sbjct 20038 GACACCACCGATAATGTCAAAGCTAAAATTCAAGACAAAGAGGGAATCCCTCCCGACCAA 20097 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGG---AAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | || | ||| || ||||| |||| ||| || ||| | ||||||||| Sbjct 20098 CAACGTCTGATTTTCGCGGGAAAACATTTGGTTAGCGACCGT---ACCCTATCCGATTAC 20154 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| |||||||| || || | |||||||| |||||| Sbjct 20155 AACATCCAAAAGGAATCCACAATTCATTTGGTGTTGCGT 20193 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||||||||| |||||||||| | || || |||||||||||||| ||| Sbjct 20206 ATGCAGATATTTGTAAAAACATTGACCGGCAAAACCATCACCCTTGAAGTGGAACCCTCC 20265 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCA 27079 ||| | ||||||| |||||| |||||||| Sbjct 20266 GACACCATTGAGAATGTCAAAGCTAAAATTCA 20297 >seq259 Length=588930 Score = 125 bits (138), Expect = 6e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| |||||| |||| || || | || || ||||| || || || Sbjct 399337 CATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCCTAG 399396 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | ||||| ||||||||||| |||||||| || ||||| ||||| Sbjct 399397 CGACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCA 399456 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || |||||||| ||||| | || |||| |||||||| Sbjct 399457 ACAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTACAA 399516 Query 27167 CATTCAAAA 27175 ||||||||| Sbjct 399517 CATTCAAAA 399525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434792898859200