Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 149 1e-30 seq93 141 2e-28 seq259 120 7e-22 seq8065 91.5 3e-13 >seq5 Length=1739417 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 || || || ||||||||||| || ||||| || || | ||| || | ||||||||||| | Sbjct 582073 AGATGGAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAAC 582014 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 || || || || ||||| | || ||||| || || |||| ||||| ||||| |||||| Sbjct 582013 TGTTTACCAGCAAAGATCAAACGCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGGATC 581954 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || ||| || |||||||| ||||| || |||||| || | ||| || || ||||| Sbjct 581953 TTGGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCG 581894 Query 211089 GTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 ||||| ||||| || || | |||||| || || Sbjct 581893 GTGAGGGTCTTCACGAAAATCTGCATCTTCTG 581862 >seq93 Length=855823 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || ||||||||||| || || | ||||| | || || |||| || Sbjct 276801 TGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGATAGGGTACGGCCGTCCTCCAATTGT 276742 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || || ||||||||||| || || | ||| |||||||| ||||| || Sbjct 276741 TTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATTTTA 276682 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| ||||| ||||||||||| ||| ||| || || || ||||| || || || || Sbjct 276681 GCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTACTTCAAGGGTGATTGTTTTGCCAGTC 276622 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| ||||| | |||||| || Sbjct 276621 AAAGTCTTCACAAAGATCTGCATATT 276596 >seq259 Length=588930 Score = 120 bits (132), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| ||||| ||||| | ||| || ||||||||||| | || || ||||| |||| Sbjct 399527 CTTTTTGAATGTTGTAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAGA 399468 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | |||||| ||||| |||| |||||| || || || || || || || |||| Sbjct 399467 TCAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCCTTGACATTTT 399408 Query 211045 CGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTA 211101 | || ||||| ||| |||||||| || ||||| || ||||| || | ||| || | Sbjct 399407 CAATAGTGTC---GCTAGGCTCAACCTCAAGGGTGATGGTTTTTCCTGTCAAAGTTTTGA 399351 Query 211102 CAAACACCTGCATTTT 211117 |||| | |||||| || Sbjct 399350 CAAAGATCTGCATGTT 399335 >seq8065 Length=22102 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||| ||||| || ||||||||||| ||||| | ||||| | | ||| || Sbjct 20180 TGAATTGTGGATTCCTTTTGGATGTTGTAATCGGATAGGGTACGGTCGCTAACCAAATGT 20121 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || || ||||||||||| ||||| | ||| || ||||| || || || Sbjct 20120 TTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGAATTTTA 20061 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || || ||| ||||||| ||| ||| || || || ||||| || || Sbjct 20060 GCTTTGACATTATCGGTGGTGTCGGAGGGTTCCACTTCAAGGGTGATGGTTTT 20008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158809150006025