Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq93 163 7e-35
seq259 132 1e-25
seq5 132 1e-25
seq8065 131 4e-25
seq207 100 7e-16
>seq93
Length=855823
Score = 163 bits (180), Expect = 7e-35
Identities = 167/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| ||| | || || ||||| |||||||| || || ||| |||||||
Sbjct 276602 CAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACCCTCAGAC 276661
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||||||| || || || ||||| || |||||||| || ||||| |||
Sbjct 276662 ACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGACCAACAA 276721
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || |||||||||||||| | || || || | || || |||| || ||| ||
Sbjct 276722 CGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTACAACATC 276781
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
||||| ||||| || || ||| | || ||| | |||||
Sbjct 276782 CAAAAGGAATCCACCCTCCATTTGGTGTTGCGTCTCAG 276819
>seq259
Length=588930
Score = 132 bits (146), Expect = 1e-25
Identities = 144/189 (76%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || || |||||| | ||||||||||| |||||||| ||||| | ||| | |
Sbjct 399341 CAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTG--AGCCTAGCG 399398
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || || || ||||| || ||||| || ||||||||||| || || || || |
Sbjct 399399 ACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAAC 399458
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|| || | ||||| || |||||||| | ||||||||||| |||||| | ||||| |||
Sbjct 399459 AAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTACAACA 399518
Query 178102 TCCAAAAAG 178110
| |||||||
Sbjct 399519 TTCAAAAAG 399527
>seq5
Length=1739417
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || ||||| |||||||| || || | || || ||| || |||
Sbjct 581871 CAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCTTCCGAC 581930
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || ||| ||||| || ||||||||||| || || || || || ||
Sbjct 581931 ACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCACCCGATCAACAG 581990
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || |||||| | ||||||||| | |||||| | || || ||| |
Sbjct 581991 CGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTACAACATT 582050
Query 178104 CAAAAAGAATCAACACTGCATCT 178126
|| ||||| || || || |||||
Sbjct 582051 CAGAAAGAGTCCACCCTCCATCT 582073
>seq8065
Length=22102
Score = 131 bits (144), Expect = 4e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATT 178010
||||| |||||||| || |||||| ||| ||||||| ||| || |||||| || |||
Sbjct 20008 AAAACCATCACCCTTGAAGTGGAACCCTCCGACACCACCGATAATGTCAAAGCTAAAATT 20067
Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070
|| |||||||| ||||||||||| ||||| ||||| || || ||||| |||||||| |
Sbjct 20068 CAAGACAAAGAGGGAATCCCTCCCGACCAACAACGTCTGATTTTCGCGGGAAAACATTTG 20127
Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130
| | | || || ||||||| ||| ||||||| ||||| ||| | ||| | ||
Sbjct 20128 GTTAGCGACCGTACCCTATCCGATTACAACATCCAAAAGGAATCCACAATTCATTTGGTG 20187
Query 178131 TTGAGACTCAGA 178142
||| | ||| ||
Sbjct 20188 TTGCGTCTCGGA 20199
>seq207
Length=511460
Score = 100 bits (110), Expect = 7e-16
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081
||| ||||| || || ||||| ||||||||||||||||||||||| | ||||||| |
Sbjct 362003 AGGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAA 361944
Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136
|| || | || |||||| | ||||||||||| ||||| ||| | || ||||||
Sbjct 361943 AACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGTATTGAGA 361889
Score = 84.2 bits (92), Expect = 5e-11
Identities = 85/110 (77%), Gaps = 3/110 (3%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| ||||||| |||||||| | ||||| ||||| |||||||| || || |||
Sbjct 364053 AAAATGC---AAATTTTTGTGAAAACATTAACAGGGAAAACTATCACCCTTGAAGTTGAA 363997
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
||||| | || || || |||||| |||||||| |||||||||||
Sbjct 363996 CCATCAGATTCTATTGAAAATGTCAAATCTAAGATTCAAGACAAAGAAGG 363947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203375164523490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |