Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq93 163 7e-35 seq259 132 1e-25 seq5 132 1e-25 seq8065 131 4e-25 seq207 100 7e-16 >seq93 Length=855823 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || ||||| |||||||| || || ||| ||||||| Sbjct 276602 CAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACCCTCAGAC 276661 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||||||| || || || ||||| || |||||||| || ||||| ||| Sbjct 276662 ACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGACCAACAA 276721 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||||||||| | || || || | || || |||| || ||| || Sbjct 276722 CGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTACAACATC 276781 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||| ||||| || || ||| | || ||| | ||||| Sbjct 276782 CAAAAGGAATCCACCCTCCATTTGGTGTTGCGTCTCAG 276819 >seq259 Length=588930 Score = 132 bits (146), Expect = 1e-25 Identities = 144/189 (76%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || || |||||| | ||||||||||| |||||||| ||||| | ||| | | Sbjct 399341 CAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTG--AGCCTAGCG 399398 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || ||||| || ||||| || ||||||||||| || || || || | Sbjct 399399 ACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAAC 399458 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || || | ||||| || |||||||| | ||||||||||| |||||| | ||||| ||| Sbjct 399459 AAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTACAACA 399518 Query 178102 TCCAAAAAG 178110 | ||||||| Sbjct 399519 TTCAAAAAG 399527 >seq5 Length=1739417 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| |||||||| || || | || || ||| || ||| Sbjct 581871 CAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCTTCCGAC 581930 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||| || ||||||||||| || || || || || || Sbjct 581931 ACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCACCCGATCAACAG 581990 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||| | ||||||||| | |||||| | || || ||| | Sbjct 581991 CGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGTACTCTTTCAGACTACAACATT 582050 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || ||||| || || || ||||| Sbjct 582051 CAGAAAGAGTCCACCCTCCATCT 582073 >seq8065 Length=22102 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATT 178010 ||||| |||||||| || |||||| ||| ||||||| ||| || |||||| || ||| Sbjct 20008 AAAACCATCACCCTTGAAGTGGAACCCTCCGACACCACCGATAATGTCAAAGCTAAAATT 20067 Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 || |||||||| ||||||||||| ||||| ||||| || || ||||| |||||||| | Sbjct 20068 CAAGACAAAGAGGGAATCCCTCCCGACCAACAACGTCTGATTTTCGCGGGAAAACATTTG 20127 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | | | || || ||||||| ||| ||||||| ||||| ||| | ||| | || Sbjct 20128 GTTAGCGACCGTACCCTATCCGATTACAACATCCAAAAGGAATCCACAATTCATTTGGTG 20187 Query 178131 TTGAGACTCAGA 178142 ||| | ||| || Sbjct 20188 TTGCGTCTCGGA 20199 >seq207 Length=511460 Score = 100 bits (110), Expect = 7e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| ||||| || || ||||| ||||||||||||||||||||||| | ||||||| | Sbjct 362003 AGGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAA 361944 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || | || |||||| | ||||||||||| ||||| ||| | || |||||| Sbjct 361943 AACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGTATTGAGA 361889 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| |||||||| | ||||| ||||| |||||||| || || ||| Sbjct 364053 AAAATGC---AAATTTTTGTGAAAACATTAACAGGGAAAACTATCACCCTTGAAGTTGAA 363997 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| | || || || |||||| |||||||| ||||||||||| Sbjct 363996 CCATCAGATTCTATTGAAAATGTCAAATCTAAGATTCAAGACAAAGAAGG 363947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203375164523490