Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq28771 89.7 4e-13 >seq28771 Length=922144 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 102089 CCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCC 102148 ||||| |||| || | ||||| | ||||| | ||||| || || ||||| |||||| Sbjct 287961 CCTTCTTCTCGGTTAGTGAAACCTAAGTTATCAAGAAATGTTCGGGAGCCATTTGCATCC 287902 Query 102149 CAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCAC 102208 ||||| ||||| || | | || | |||||||| || || || | || | |||| Sbjct 287901 CAAATATGCACCCCTTTTTTGGCGAGAACCTTGCTGTCTGTTGAACCAGTTATCATCCAC 287842 Query 102209 AACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCA 102268 || | |||||||| || || || ||| |||| ||||| || |||||||| ||| || Sbjct 287841 AATAATTCTTCAATGACTCCCCTTGTAAACACTCGTTTAGTTGTCAAAAGTGGTAATACA 287782 Query 102269 TT 102270 || Sbjct 287781 TT 287780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360984965767970