Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq34861 509 2e-139 seq39759 102 1e-16 >seq34861 Length=230841 Score = 509 bits (564), Expect = 2e-139 Identities = 1193/1794 (66%), Gaps = 22/1794 (1%) Strand=Plus/Plus Query 52790 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 52849 |||||| || || | ||||| ||||| | | | || ||||| | || | || Sbjct 60363 ATTTTAGATTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAA 60422 Query 52850 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAA 52909 |||||||||||||| ||||| | ||||| | ||||| || || ||| | ||| | Sbjct 60423 TACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCA 60482 Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969 ||| |||| || || | ||| || || | ||||||||||||||| || || || || ||| Sbjct 60483 TAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTG 60542 Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC 53029 || ||||||||||| || | || || | ||||||||||| ||||||||| | | | Sbjct 60543 TCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGT 60602 Query 53030 TTAATATCTTCTGGAA---GGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTA 53086 ||||||| | ||||| | | |||| |||||||| ||| | || ||| | Sbjct 60603 CTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGAACCATTGTTATGAATTATCTGA 60662 Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| || || |||| ||||| | | || || || ||| | | ||| | || Sbjct 60663 TTCTTCATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTT 60722 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || ||||||||||||||||| || || | | |||||| || ||| | ||||| Sbjct 60723 ACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCA 60782 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | || |||||||||||||| ||||| || || ||||| || ||||| || || | || Sbjct 60783 AATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAA 60842 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | ||| | ||| || ||| | ||||| || |||| | ||| | ||| ||| Sbjct 60843 AGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCACAGA 60902 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 53385 || | || ||| | || || | || || | || ||| Sbjct 60903 TCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACT-TCC 60961 Query 53386 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 53445 | |||| ||| || ||| | || || || ||||| ||||| || |||||||| || Sbjct 60962 TTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCC 61021 Query 53446 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGG 53505 ||| || || ||||| ||||| | | || || | ||| || || ||| |||| Sbjct 61022 GTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATATGG 61081 Query 53506 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 | | || | ||| | || ||||| ||||| || |||||||| || ||||| || Sbjct 61082 AATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTGTG 61141 Query 53566 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 53625 || | | ||||| | | |||||||| | || || || |||| ||| || |||||||| Sbjct 61142 TCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTTATT 61201 Query 53626 GAGGTT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 || || | || | | ||| | || || |||| ||| ||||| | || | || Sbjct 61202 TAGATTCTGTGTTATTGTCTTCGTG-ACTTCTTTCAATTTTGTAAAATTATATGTTTTAT 61260 Query 53685 CT--ATTA-CAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 || |||| |||| | || || ||||| || |||| ||||| || || || |||| | Sbjct 61261 CTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATCTG 61320 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | ||||| | || ||||| || | |||||| || || ||||| || | ||||| Sbjct 61321 CTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGATTTT 61380 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 ||||||||| ||| | ||||| | ||| || || || ||| |||| || || ||||| | Sbjct 61381 TTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCGA 61440 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGC-----CTTTATTATAGATTTGTA 53916 || | ||||| || || ||||| | | |||| ||| ||| || | Sbjct 61441 CTTGTGCCTCTATTATTGCCTTCCACAGTTCTTGAGCTCGAACTTGCTTAACGA-----A 61495 Query 53917 TCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 |||||||| ||||||| | ||| ||| |||||| || ||||||||| | | | Sbjct 61496 CCTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACAGTCGGC 61555 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 | ||||| || || | || ||||| || |||| | | || | | || || || Sbjct 61556 AAGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGGTT 61615 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 |||||| | |||||||||||| | ||| ||||| ||||| | ||| || || || Sbjct 61616 CATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCTTT 61675 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || ||||||||||| ||||| | ||| | | || |||||||||||| ||||| ||||| Sbjct 61676 ACCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAGTA 61735 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 || | | | | || || ||||| || ||||| || || | || ||||| || ||||| Sbjct 61736 AATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTATT 61795 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 || |||||||||||||| | || ||||||||| | || || || || | || ||| | Sbjct 61796 GTACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAGGT 61855 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 || | | | ||| | || || || || || || || ||| || ||||| Sbjct 61856 ACCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAATTAA 61915 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTA 54395 ||| ||| ||||||| || ||||| || || || || |||||||| ||| || || | | Sbjct 61916 TGCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTATG-A 61974 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | || || ||| | ||| | | |||| | ||| || || || ||| || | Sbjct 61975 GGAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGCAT 62034 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || || ||||||| || | | ||||| || || || |||| || || || Sbjct 62035 GAGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTCAC 62094 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 ||| || || | | ||| ||||||| ||| ||||| ||||||||| | |||| Sbjct 62095 CATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCAGCAATCT 62148 Score = 113 bits (124), Expect = 5e-20 Identities = 121/159 (76%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 54772 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 54831 |||| |||| || ||||||||||||| ||| |||| |||| ||| || |||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 54832 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891 ||||||||| || | |||||| ||||||||| | || || | | | |||||||||| Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 54892 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 54930 || |||||||||||| || ||||| | |||||| || Sbjct 64214 CACAGTTGTTACTCCAGAGTAAATTCCATTGATAACTTT 64252 >seq39759 Length=128263 Score = 102 bits (112), Expect = 1e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||| ||||| || ||| || || || |||||||| | ||| ||||| | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| ||||| || ||||| ||| |||||||| ||||||||||| || ||||||| Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 24277 CAATAAGTCTTTCTCCATAACCGGC-GCTGTCATG--TATCCACTTTTGAGCCCAATCGG 24333 ||| | | ||| ||| | || | | | || ||||| | | ||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 |||| || |||||||| || | || || || ||||| || Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 Score = 100 bits (110), Expect = 3e-16 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 24404 ATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGA 24461 ||| |||||||||| || || || ||| || || || | || || || || ||||| Sbjct 66885 ATAAGTATCAATCAGCAATGAGTA--CATCTCTGAGTGTACATTCTCCATAGCAATTTGG 66828 Query 24462 AATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAA 24521 ||||| || || | || || || ||| || |||||| |||||||||| | || Sbjct 66827 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAG 66768 Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 |||||||| ||||| || ||| || |||||||| |||||||||||||| ||||| Sbjct 66767 TTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 Score = 89.7 bits (98), Expect = 6e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| ||||||||| ||||||||||| ||||| || || || ||||| ||||| | | Sbjct 66150 TTGGATAAATCCACTTCCTCCACTGTCCAGAATGAAGCTTCAGCTTTTTTGTACATTTGC 66091 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGGAT 24739 ||||| ||| ||||||| || || || || || || | ||||||| |||| || Sbjct 66090 CAGATATCAGGATATTGGATGGGGAAGATGACGAAACGCCGCGGATTTTCACGCAA-GAG 66032 Query 24740 TGGTTCCA 24747 |||||||| Sbjct 66031 TGGTTCCA 66024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593272820685600