Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq55175 228 7e-55 seq33159 113 4e-20 seq27463 93.3 4e-14 seq27267 89.7 4e-13 >seq55175 Length=171662 Score = 228 bits (252), Expect = 7e-55 Identities = 496/733 (68%), Gaps = 17/733 (2%) Strand=Plus/Minus Query 105771 GTTTGACCAAGCCCCTTTAAAATCGTAACTCATGAGAAATATTTTGCCTAATGACTTTTG 105830 ||| ||||| || ||||| || |||||||||||||| || || | | | | ||||||| Sbjct 39800 GTTGGACCAGGCACCTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTG 39741 Query 105831 CGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAA 105890 |||||| ||| | ||| || |||||| || | || || || ||||| || | Sbjct 39740 GGCTTCGCTGTAATCTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAG 39681 Query 105891 TTCGTAAACCCTGCCGGTTTGCGCTTCG---AGGTCGTCTAGCATTGCGCGCAGCTCCTC 105947 ||||| | | || |||| ||||| || |||| || |||| |||||| ||||| Sbjct 39680 CTCGTATTTCTTACCCGTTT---CTTCGGAAAGCTCGTTTAACATTTCGCGCAACTCCTT 39624 Query 105948 CAACAACAAAATGTATGTTTTGGCGTCACCGTCCGCATCGCCCAACGACGGG-TTAGCCC 106006 || | || || || | || | | || | |||| | |||| ||||| | Sbjct 39623 CATTAGTTCAACATAAACTT---CTCCATCTTTCGGG-CTACCAAGGTCGGGGTTAGCTC 39568 Query 106007 CTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCA 106066 | || ||||| || || |||||||||||||| ||||| || ||||| ||||| ||| | Sbjct 39567 CCTTACCGCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAA 39508 Query 106067 GAAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATC-GTGCATAAAATAA 106125 | || || || || ||||| || || || | || | || ||| | || | | Sbjct 39507 GGAAATCTTTCACAGAATCAACGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAAGAAGA 39448 Query 106126 AATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCT 106185 || || || | ||||||||||| || || ||||| || ||||| | | || | ||| Sbjct 39447 AA-GGATCAGCAAGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCT 39389 Query 106186 AATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACA 106245 ||| | ||||| ||| |||||||||||||| || || || ||||||| |||| Sbjct 39388 TGTTTAAGGGACATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAAGACAAG 39329 Query 106246 CCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCG 106305 || || || || ||||| | || ||||| ||||||||||||| ||| ||||||||||| Sbjct 39328 CCCTTCTGTGGCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCA 39269 Query 106306 CGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCC--GGGTATCGTTTTGAGGGCGT 106363 || || |||| || | || | || || ||| || || | | || ||| | || Sbjct 39268 CGGCCACTGCATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTT--AAACTGT 39211 Query 106364 CGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAGTGTGATAAATTTG 106423 | || || |||||||| || || || || || ||||||||||| | || | | ||| | Sbjct 39210 CATTGATGCCATCGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGATTAG 39151 Query 106424 GCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCACTCAACAAAGTACG 106483 | | || | || || || || || || ||| |||||||| || || ||||| | Sbjct 39150 GAATTGGTATACGATCGACTGGGAATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAG 39091 Query 106484 CAGCGACAATTTT 106496 | | |||| ||| Sbjct 39090 CTCCAACAACTTT 39078 >seq33159 Length=163697 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | |||||| | || || || || || || || |||||| | Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATC 97306 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || |||| ||||||| ||||| ||||| | ||| |||||| Sbjct 97307 AGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATCA 97366 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||| | |||||||||||||| || || || |||||| || | ||| | |||| ||| Sbjct 97367 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTT--CCGACTAC 97424 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| || |||||||| |||||| ||||| | || || ||||||| Sbjct 97425 AATATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGG 97474 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| ||||| || || ||||| || ||| |||||| | Sbjct 97020 ATGCAGATTTTCGTCAAAACCTTGACTGGGAAGACCATCACATTGGAAGTTGAACCCTCC 97079 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || ||||| ||||| | ||| ||| || Sbjct 97080 GACACAATTGAAAATGTTAAGGCGAAGATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 97139 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| |||||||| |||| ||| || || | || |||||| Sbjct 97140 CAGAGGTTGATCTTTGCCGGCAAACAGTTGGAGGATGGACGTACATTGTCAGACTACAAT 97199 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||||||||||||| | || | || ||| ||||||| Sbjct 97200 ATCCAGAAGGAATCTACTCTTCACTTAGTCCTCCGTTTAAGAGGAGG 97246 >seq27463 Length=372575 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 28953 AGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 29012 ||| ||| |||||| || ||| | ||||| | ||||| |||||||| || || Sbjct 145874 AGTTTAACAATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTT 145815 Query 29013 GAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCC 29072 ||| || | || || | | || | || |||||| || ||||| || | || Sbjct 145814 GAAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCA 145755 Query 29073 GTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCC 29132 |||||| |||||| | ||||| || |||||||| |||||||| ||| || | Sbjct 145754 CCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTTTGTCG 145695 Query 29133 GATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || ||||||||||| || |||||| |||| || | | |||||||| Sbjct 145694 GACTACAACATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAGGAGG 145639 >seq27267 Length=86652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25937 CACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGAG 25996 |||||||| ||||||||||||| ||||||| | ||||| |||||||| ||||| | Sbjct 6884 CACGGCTTCCACGTGCACGAATTCGGCGACAATACAAACGGGTGCACGTCCGCCGGCGCT 6943 Query 25997 CACTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGGC 26056 ||||| || |||| ||| |||| ||||| || ||| || | | || |||||| Sbjct 6944 CACTTCAACCCCAACAAGCAGGAGCACGGTGCACCCACCGCCACCGTGCGCCACGTTGGC 7003 Query 26057 GACTTGGGCAACAT 26070 ||| | |||||||| Sbjct 7004 GACCTCGGCAACAT 7017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428020325737850