Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq55175 215 4e-51 seq20129 179 3e-40 seq36087 118 9e-22 seq27267 113 4e-20 seq33159 111 1e-19 seq32636 100 2e-16 seq21507 96.9 3e-15 seq26923 91.5 1e-13 seq33871 89.7 4e-13 seq10121 82.4 6e-11 >seq55175 Length=171662 Score = 215 bits (238), Expect = 4e-51 Identities = 445/656 (68%), Gaps = 7/656 (1%) Strand=Plus/Minus Query 102322 GTTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTG 102381 ||||||||| || || || || ||||||||||||||||| || | || | || |||| Sbjct 39800 GTTGGACCAGGCACCTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTG 39741 Query 102382 AGCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAG 102441 || || ||| | || || ||| || || | || | |||||| || || || Sbjct 39740 GGCTTCGCTGTAATCTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAG 39681 Query 102442 CTCGTACGTCTTGTTCGTTTGCAGCTGCA-GTTCGTCCAGCATGGCGCGCAACTCTTTCA 102500 |||||| |||| ||||| | | | | | |||| | ||| |||||||||| |||| Sbjct 39680 CTCGTATTTCTTACCCGTTT-CTTCGGAAAGCTCGTTTAACATTTCGCGCAACTCCTTCA 39622 Query 102501 GCAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCT 102560 | ||| || || | || | || | || || | ||||| || |||| Sbjct 39621 TTAGTTCAACATAAACTTCTCCATCTTTCGGGC---TACCAAGGTCGGGGTTAGCTCCCT 39565 Query 102561 TGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAA 102620 | ||||| || || |||||||||||||| || || ||||| |||||||| || | | Sbjct 39564 TACCGCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAAGGA 39505 Query 102621 ACTCTTTAACGGATTCGACAAACACGCGCCGCTTGTCCGCGTC-GTGCATGAAATAGAAC 102679 | ||||| || || || || || | |||||| | ||| ||| | | | |||| Sbjct 39504 AATCTTTCACAGAATCAACGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAAGA-AGAAA 39446 Query 102680 GGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGC 102739 || || | || |||||||| |||||||| || |||||||| | | ||| | || | Sbjct 39445 GGATCAGCAAGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGT 39386 Query 102740 TTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCC 102799 || | ||||| ||| ||||| ||||||||||| || || ||||| | || | |||| Sbjct 39385 TTAAGGGACATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAAGACAAGCCC 39326 Query 102800 TTTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGG 102859 || || |||||||| | || ||||| || ||||| || | ||||| || ||| | ||| Sbjct 39325 TTCTGTGGCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCACGG 39266 Query 102860 CCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTT 102919 || |||| || ||||| || |||| ||||||||| || ||| | ||| || Sbjct 39265 CCACTGCATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTTAAACTGTCATTG 39206 Query 102920 AGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGG 102975 | || ||||| || ||||| || || || || |||| ||||| | ||| || || Sbjct 39205 ATGCCATCGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGATTAGG 39150 >seq20129 Length=608 Score = 179 bits (198), Expect = 3e-40 Identities = 206/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 29024 CACGCCTCAGTCATCACCCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCG 29083 || ||||| | |||||| || || ||||||||||||| || || | ||||| || Sbjct 288 CAGGCCTCCGACATCACTTTTTGAACGTAGTCGCGGCCCTTTACCAGTTGAACGTAAGCG 229 Query 29084 CAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTC 29143 || | |||| ||||||| ||||| |||| ||| || |||||||| ||||| || ||| Sbjct 228 CATCTGTCGAACCAGCGCGCGTGCTGCTCCCATGGGACGTCGTCGTTCTCCCAGTCTTTC 169 Query 29144 AGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCG 29203 || || ||||||||| | ||||| ||| ||||| || ||||| ||||| ||||| ||| Sbjct 168 AGGCCACCGTCGCAGTAGAAGCATTTCGTTTTGTCTCCGTGGCCGGTGTAGAAGAAACCG 109 Query 29204 GCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGC 29263 || || ||||| |||||||| || |||| | || ||||| || |||||||| Sbjct 108 GCTTCCGCCAATTCTTCGGGTTTTTGCTTCATACACCGCGGCCAGTCTTTGAAGGTGCGA 49 Query 29264 AAACGCGCGGCTTCCGTGGCATACTGCGGGTGCGCGG 29300 | |||||| ||||| | ||| ||| | |||||| ||| Sbjct 48 AGACGCGCCGCTTCGGAGGCGTACCGGGGGTGCACGG 12 >seq36087 Length=321 Score = 118 bits (130), Expect = 9e-22 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| || | || | ||||| |||||||||||| || || || ||||| | Sbjct 225 CCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 166 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| |||||||| || || | || |||| ||||||||| ||| Sbjct 165 AGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 106 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||||| | | | ||| ||| |||||| | Sbjct 105 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCACT 46 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGC 21173 |||| || ||||||||||| || | |||||| ||||| || ||| Sbjct 45 TCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq27267 Length=86652 Score = 113 bits (124), Expect = 4e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 |||||| |||||||| ||||| ||| | | |||| ||| || ||||| ||| | | Sbjct 7015 GTTGCCGAGGTCGCCAACGTGGCGCACGGTGGCGGTGGGTGCACCGTGCTCCTGCTTGTT 6956 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930 |||||| ||||| |||| ||||||||||| ||||| | ||||||||||||||||||| Sbjct 6955 GGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTTGTATTGTCGCCGAATTCGTGCAC 6896 Query 23931 GTGAAAACCGTG 23942 ||| || ||||| Sbjct 6895 GTGGAAGCCGTG 6884 >seq33159 Length=163697 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || |||||||| || ||||| ||||| | Sbjct 97018 CCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 96959 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||||||||| || | || | ||||||||||| ||| Sbjct 96958 AGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 96899 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||| || | | | || || |||||| Sbjct 96898 ATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 96839 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| ||| || ||||||||||| || || || ||||| || ||||| ||| Sbjct 96838 TCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATCTTG 96788 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | || |||||||| || ||||| ||||| | Sbjct 98158 CCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 98099 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || ||||| ||||| || | || | ||||||||||| ||| Sbjct 98098 AGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 98039 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||| || |||||| | | | || || |||||| | Sbjct 98038 ATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGACT 97979 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || || || || ||||| || || || ||||| Sbjct 97978 TCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| | | ||| || | || | ||| || ||||| || || || ||||| | Sbjct 97248 TTCCTCCTCTTAAACGGAGGACTAAGTGAAGAGTAGATTCCTTCTGGATATTGTAGTCTG 97189 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | ||||||| ||||||||| ||| | || | ||||||||||| || Sbjct 97188 ACAATGTACGTCCATCCTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 97129 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||| || |||||| || || | | | || || ||| || Sbjct 97128 GAATGCCTTCCTTATCTTGGATCTTCGCCTTAACATTTTCAATTGTGTCGGAGGGTTCAA 97069 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || |||||||| || || || |||||||| || || ||||| Sbjct 97068 CTTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACGAAAATCTGCAT 97020 >seq32636 Length=346 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||||| | || | ||||||||||| || ||||||||||| | Sbjct 324 TTCCACCACGGAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGG 265 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | | || ||||| |||||||| || | || || | ||||||||| | Sbjct 264 ACAGGGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGAG 205 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||||| || || | | | || || |||||| Sbjct 204 GAATGCCTTCCTTGTCCTGGATCTTCGCCTTTACATTCTCAATGGTGTCCGAAGGCTCCA 145 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||| ||||| || || || | || || || || ||||||||| Sbjct 144 CTTCCAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAGATTTGCATT 95 >seq21507 Length=372 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||| |||||||||| || | || ||||| || || || || ||||| | Sbjct 248 CCACCGCGCAATCTGAGCACCAGGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCTGAG 189 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || |||||||| |||||| | || | || ||||| || ||| Sbjct 188 AGTGTGCGGCCGTCTTCTAGCTGTTTACCCGCAAAGATTAACCTTTGCTGATCTGGGGGG 129 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||| || |||||| | ||| ||||| |||||| Sbjct 128 ATTCCCTCCTTGTCTTGGATTTTGGCTTTCACATTTTCGATGGTATCGGAGGGCTCAACC 69 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTTA 21188 || | || ||||||||||| || | || ||||| || || ||||| |||| || |||| Sbjct 68 TCTAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGACTC-CTTA 10 >seq26923 Length=415599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 29356 CACAAACGGACACTGCGGCGCCCACCGCTTGTGGTCCGTTTCCGGGTCGTCGCCCCTTAC 29415 || ||||||||| || || ||||| |||| |||||| | | |||||||||||| || Sbjct 192710 CAAAAACGGACATTGTGGGGCCCAACGCTGGTGGTCTTTCGCAGGGTCGTCGCCCTCGAC 192651 Query 29416 CCAATTCGTAATCTCTACCTTGCAAAACGCGCAGCGCACCTCGTCGCCGCGGCCCAAGTA 29475 ||| | | || || || || ||||| ||||| || || |||||||| ||||| | ||| Sbjct 192650 CCAGCGCATGATTTCGACTTTACAAAAGGCGCAACGAACTTCGTCGCCACGGCCGAGGTA 192591 Query 29476 GTAGAACCCGCTG 29488 ||||| ||| || Sbjct 192590 ATAGAAGCCGTTG 192578 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 29048 ACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGCGTGT 29107 ||||| || |||||||||| ||||| | ||| ||||| | | ||||| | ||||| Sbjct 93760 ACAAACTCATGGCCCTTGACCAGCAGGAGGTAGCCGCAGTGCGGGAACCAGTGCGCGTGC 93701 Query 29108 TGCTG-CCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAAGCA 29166 | ||| ||||||||||||| | | |||||| | |||||||||||||||| | || || Sbjct 93700 T-CTGACCACGGCGCGTCGCCCGCTTCCCACTTGCCCAGACCGCCGTCGCAGTAGAAACA 93642 Query 29167 CC 29168 || Sbjct 93641 CC 93640 >seq33871 Length=3159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || |||||||| || ||||| ||||| | Sbjct 2899 CCGCCACGAAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 2958 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || ||||| ||||| || | || | ||||||||||| ||| Sbjct 2959 AGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 3018 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||| || ||| || | | | || || || ||| | Sbjct 3019 ATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATGGTGTCTGAAGGTTCCACT 3078 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||| ||||| |||| ||||| || || || ||||| Sbjct 3079 TCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTAACGAAGATCTGCAT 3125 >seq10121 Length=1170 Score = 82.4 bits (90), Expect = 6e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 23870 TGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCA 23929 ||||||| ||||| |||| ||||||||||| ||||| || ||||||||||||| |||| Sbjct 1159 TGGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTCGTGTTGTCGCCGAATTCATGCA 1100 Query 23930 CGTGAAAACCGTG 23942 |||| || ||||| Sbjct 1099 CGTGGAAGCCGTG 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421948004206520