Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq55175 250 2e-61 seq33159 107 2e-18 seq27267 84.2 2e-11 >seq55175 Length=171662 Score = 250 bits (276), Expect = 2e-61 Identities = 649/976 (66%), Gaps = 19/976 (2%) Strand=Plus/Minus Query 97296 TAATCTACAACACCGTCCTCCCACGTGCCCGACACCGGCCCGTTGCCAGTGCCGGAAAA- 97354 ||||| |||||||| |||| ||| || || || || || || | |||| | || Sbjct 40042 TAATCAACAACACCATCCTGCCATGTACCTTTTACTGGTCCTGTGGCGTTGCCAGTGAAT 39983 Query 97355 --ATAGTTGCCATTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCCGTACATGGCGACG 97412 || ||| || ||| || | ||| || || ||||||||||| |||||||| || || Sbjct 39982 GGATTGTTACC-TTCATA-ACCGTGT-ACACCAGTCCAGCCGCGTCCGTACATAGCTACA 39926 Query 97413 CCCACAATTATTTTGTTGGGATCGACGCCTTGTTCCAGTAACGCATCGACAGCGTAATGT 97472 || || | || || || || | || ||||| | ||||| | ||| | ||| Sbjct 39925 CCTACCACAATCTTCTTAGGGTTCACACCTTGAGCAAGTAAATATTTAACACCAAAATCA 39866 Query 97473 GTAGTGTACAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAA 97532 || || || |||| | ||||| || || || | | || || | | || | Sbjct 39865 GTGGTATAAGTTTCTTTGGGATTCCATGCAGGGGCATATAGGGGAGTCTGAT-GACCGAG 39807 Query 97533 TCCGT-GTTTGACCAAGCCCCTTTAAAATCGTAAGTCATGAGAAATATTTTGTCTAATGA 97591 || ||| ||||| || ||||| || |||||| ||||||| || || | ||| | | Sbjct 39806 GGTGTCGTTGGACCAGGCACCTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATA 39747 Query 97592 CTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCT 97651 |||||| |||||| ||| | ||| || |||||| || | || || || ||||| Sbjct 39746 CTTTTGGGCTTCGCTGTAATCTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGA 39687 Query 97652 TGTTAATTCGTAAACCCTGCCGGTTTGCACTTCG---AGGTCGTCTAGCATTTCGCGCAG 97708 || | ||||| | | || |||| ||||| || |||| || ||||||||||| Sbjct 39686 GGTGAGCTCGTATTTCTTACCCGTTT---CTTCGGAAAGCTCGTTTAACATTTCGCGCAA 39630 Query 97709 CTCATCCAACAACAGAATGTATGTTTTGGCGTCACGCTCCGCATCGCCCAGCGACGGGTT 97768 ||| | || | || || || | || || | | || || ||||| Sbjct 39629 CTCCTTCATTAGTTCAACATAAACTTCTCCATCTT--TCGGGCTA-CCAAGGTCGGGGTT 39573 Query 97769 AGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTCCACAC 97828 ||| || || ||||| || ||||||||||||| ||| |||||||| || || ||||| Sbjct 39572 AGCTCCCTTACCGCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGT 39513 Query 97829 TTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTTCAACGTC-GTGCATGA 97887 ||| | || || || || || || || || || | || | ||| ||| | | Sbjct 39512 TTGAAGGAAATCTTTCACAGAATCAACGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAA 39453 Query 97888 AATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATGTGGGT 97947 | |||| || || | ||||||||||| || || ||||| || ||||| || | || Sbjct 39452 GA-AGAAAGGATCAGCAAGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCC 39394 Query 97948 TTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGG 98007 | ||| ||| | ||||| || ||||||||||||||||| ||||| ||||||| | Sbjct 39393 TAGCTTGTTTAAGGGACATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAAG 39334 Query 98008 ACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTTGAAAT 98067 ||| |||||| || || ||||| | || ||||| |||||||| |||| ||| ||||||| Sbjct 39333 ACAAGCCCTTCTGTGGCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAAT 39274 Query 98068 CTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGG 98127 |||| || || ||||| || || || ||||||| |||||| || ||| || | Sbjct 39273 CTTCACGGCCACTGCATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTTAAAC 39214 Query 98128 CGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGTGCGATAAAT 98187 ||| || || |||||||| || || || || || ||||| ||||| | || | | || Sbjct 39213 TGTCATTGATGCCATCGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGAT 39154 Query 98188 TTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGACAAAGT 98247 | || | || | || || || || | || ||| |||||||| || || |||| Sbjct 39153 TAGGAATTGGTATACGATCGACTGGGAATTTTCGTGGGTAAACACCCCATTCCACGAAGT 39094 Query 98248 ACGCAGCGACAATTTT 98263 | || | |||| ||| Sbjct 39093 AAGCTCCAACAACTTT 39078 >seq33159 Length=163697 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | |||||| | || || || || || || || |||||| | Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATC 97306 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | || ||||||| ||||| ||||| | ||| |||||| Sbjct 97307 AGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATCA 97366 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 ||| | |||||||||||||| || || | |||||| || | ||| | |||| ||| Sbjct 97367 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTT--CCGACTAC 97424 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||| |||||||| |||||| ||||| | || || ||||||| Sbjct 97425 AATATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGG 97474 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| ||||||| ||||| || || ||||| || ||| |||||| | Sbjct 97020 ATGCAGATTTTCGTCAAAACCTTGACTGGGAAGACCATCACATTGGAAGTTGAACCCTCC 97079 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || ||||| ||||| | ||| ||| || Sbjct 97080 GACACAATTGAAAATGTTAAGGCGAAGATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 97139 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| |||||||| ||||| ||| || || | || |||||| Sbjct 97140 CAGAGGTTGATCTTTGCCGGCAAACAGTTGGAGGATGGACGTACATTGTCAGACTACAAT 97199 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || |||||||||||||||||| | || | || ||| ||||||| Sbjct 97200 ATCCAGAAGGAATCTACTCTTCACTTAGTCCTCCGTTTAAGAGGAGG 97246 >seq27267 Length=86652 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 22146 CACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGAG 22205 |||||||| ||||||||||||| ||||||| | ||||| |||||||| ||||| | Sbjct 6884 CACGGCTTCCACGTGCACGAATTCGGCGACAATACAAACGGGTGCACGTCCGCCGGCGCT 6943 Query 22206 CATTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGGC 22265 || || || |||| ||| |||| ||||| || ||| || | | || |||||| Sbjct 6944 CACTTCAACCCCAACAAGCAGGAGCACGGTGCACCCACCGCCACCGTGCGCCACGTTGGC 7003 Query 22266 GACTTGGGCAACAT 22279 ||| | |||||||| Sbjct 7004 GACCTCGGCAACAT 7017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410494051744580