Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq33159 136 6e-27 seq27463 122 1e-22 seq410 89.7 8e-13 >seq33159 Length=163697 Score = 136 bits (150), Expect = 6e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||||||||||| || ||||| || ||||| | ||| || Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATC 97306 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| ||||| || |||||||||||||| ||||| || || || |||| Sbjct 97307 AGACACCATTGAGAATGTTAAAGCA-AAAATTCAAGATAAGGAAGGCATTCCCCCAGATC 97365 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||| | ||||| ||||| || || || | || ||| |||| ||| | || || | Sbjct 97366 AGCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCCGACTACA 97425 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||||| || | || ||||| | ||||| |||| || || Sbjct 97426 ATATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGGCAT 97477 Score = 87.8 bits (96), Expect = 3e-12 Identities = 178/261 (68%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||||| || || ||||| || || | || |||| | | Sbjct 97704 ATGCAGATCTTTGTAAAAACACTGACTGGTAAAACCATCACATTGGAAGTTGAGCCTTCT 97763 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||||||||| || || ||||| || || || || Sbjct 97764 GATACTATTGAAAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 97823 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || || || || |||| ||| | || ||| | ||| || || Sbjct 97824 CAGAGGTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGCACACTCTCAGACTACAAC 97883 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || || || || || || | || ||||| | ||| | || |||||||| | | ||| Sbjct 97884 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGTATGCAGATCTTC 97943 Query 124778 ATAAAAA--TTGA-TTGTAAA 124795 |||||| |||| | ||||| Sbjct 97944 GTAAAAACCTTGACTGGTAAA 97964 >seq27463 Length=372575 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || || | || || || || || ||||| ||||| ||||| ||||||| Sbjct 145868 ACAATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCC 145809 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || || ||| ||||| |||||||||||| ||||| || || ||||| ||| Sbjct 145808 TCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGAT 145749 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||||| | || || || || ||||| || || ||| | || || || || || Sbjct 145748 CAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTTTGTCGGACTAC 145689 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || || || || |||||||| | || |||||||| | | ||||| |||| Sbjct 145688 AACATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAGGAGGTA 145637 >seq410 Length=311 Score = 89.7 bits (98), Expect = 8e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || || | || || || || || ||||| ||||| ||||| ||||||| Sbjct 127 ACAATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCC 68 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || || ||||||||| |||||||||||| ||||| || || ||||| ||| Sbjct 67 TCTGACACTATCGAAAATTTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGAT 8 Query 124656 CAACAAA 124662 || |||| Sbjct 7 CAGCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754884969696000