Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq55175 181 9e-41 seq33159 140 3e-28 seq36087 125 6e-24 seq21507 120 3e-22 seq18898 118 9e-22 seq32636 100 2e-16 seq27267 91.5 1e-13 seq28415 82.4 7e-11 >seq55175 Length=171662 Score = 181 bits (200), Expect = 9e-41 Identities = 339/495 (68%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 21581 GCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGCCGGCG 21640 || ||||| || |||||||| || |||| || | ||||| ||||| | || Sbjct 39090 GCTTACTTCGTGGAATGGGGTGTTTACCCACGAAAATTCCCAGTCGATCGTATACCAATT 39149 Query 21641 CCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCATCAAC 21700 || ||||| | ||| | | || || || | || || || |||||||| |||||||| Sbjct 39150 CCTAATCTGACTCATCTTTTGTATGGTTTTATTCCAATTTGTGGAGGCGATGGCATCAAT 39209 Query 21701 GACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGGGTCGG 21760 ||| |||| | ||||||||| | || | || ||||| || || || Sbjct 39210 GACAGTTTAAAGGAAATCGAAGGCAGTTTTCAAGCTCTTCAGCGTTCATGCAGTGGCCGT 39269 Query 21761 GCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAAAGGGC 21820 | ||||||||||| | || |||||||| ||||| || | |||||||| || |||||| Sbjct 39270 GAAGATTTCAAGGTTTCCATTCACGATCCTTGGGCTGCTCTTCAAAAGCCACAGAAGGGC 39329 Query 21821 GTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGAAGAGG 21880 | || || ||||| ||||| ||||||||||| |||||||| |||||| | | || Sbjct 39330 TTGTCTTCTTGGAATGAACCTTACAAAGGCAATTTTGGTCAGCTGATGTCCCTTAAACAA 39389 Query 21881 GCCAATCCTCACATTAAAGTGTTCGCATCGATCGGCGGATGGACTCTGTCCGATCCATTT 21940 || | || || ||||| | | | || || || || |||||||| | ||||| ||| Sbjct 39390 GCTAGGCCGGACCTTAAAATCCTACCTTCCATTGGGGGCTGGACTCTTGCTGATCC-TTT 39448 Query 21941 TATCATATGCACGACGCCGACGTCAGACGGG---TGTTTATCGATTCAGTTGAAGAATTT 21997 || | | ||| | | | || | |||| || | ||||| || |||| || Sbjct 39449 CTTCTTTTTCAC--TGACAAAGTGAAGCGGGACCGCTTCGTTGATTCTGTGAAAGATTTC 39506 Query 21998 CTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGCGGCAAG 22057 || | || |||||||||| || || || ||||||||||||| || || ||||| ||| Sbjct 39507 CTTCAAACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGCGGTAAG 39566 Query 22058 GGAGCCAACCCCGAC 22072 ||||| ||||||||| Sbjct 39567 GGAGCTAACCCCGAC 39581 >seq33159 Length=163697 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||| ||||||||||| ||||| ||| | ||||| ||| || Sbjct 97457 CACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTC 97398 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| ||||| |||||||| || || ||||| ||||| ||| Sbjct 97397 GAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTATCTTG 97338 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||||| |||||| | || | |||||| | || | || ||||| | || | || | Sbjct 97337 AATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGT-TCCACCTCTAATGTGATAGTCT 97279 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || ||||| |||||||||||||| Sbjct 97278 TCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| |||| | | ||||||||| | |||||||| || || |||||||| || Sbjct 97020 TACCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAG 96961 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || |||||| |||||||| || ||| |||| | | |||||| || || | Sbjct 96960 AGAGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 96901 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || |||||| | ||| | ||||||| ||| | Sbjct 96900 GAATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCA 96841 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || |||||||||| || || |||||||||||||| Sbjct 96840 CCTCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 96792 Score = 120 bits (132), Expect = 3e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCC 118586 ||||||||||| |||||||| || || |||||||| || | | |||| |||| ||| Sbjct 97913 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGTGTGCGTCCATCT 97856 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || ||||| || || ||| |||| | | |||||| || || || || |||||||||||| Sbjct 97855 TCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 97796 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 |||||| ||||| | ||| | || || | ||| || || | || | ||| Sbjct 97795 TGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAATGTGATGGTT 97736 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| ||||||||||| |||||||| Sbjct 97735 TTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 >seq36087 Length=321 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | |||||| || || || | || ||||| || || || ||||| || Sbjct 227 TACCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAG 168 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||||||||||||||| |||||| ||||||| |||||||| || || | Sbjct 167 AGAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGG 108 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||||||| ||||| || || | ||| | ||||| | ||| | Sbjct 107 GGATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCA 48 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 | || | || | || ||||| || || ||||| ||||| |||||| Sbjct 47 CTTCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq21507 Length=372 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| ||||| | ||||| ||||| ||||||||||| || || ||||| || | Sbjct 248 CCACCGCGCAATCTGAGCACCAGGTGGAGGGTAGACTCTTTCTGGATATTGTAGTC--TG 191 Query 118572 ATAGTGCGCGTA--TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| || || |||||||| || || |||| | | |||||||| || | Sbjct 190 AGAGTGTGCGGCCGTCTTCTAGCTGTTTACCCGCAAAGATTAACCTTTGCTGATCTGGGG 131 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| ||||| ||| || | ||||| ||| || | | ||| | Sbjct 130 GGATTCCCTCCTTGTCTTGGATTTTGGCTTTCACATTTTCGATGGTATCGGAGGGCTCAA 71 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || ||||| || || || || || ||||||||||| Sbjct 70 CCTCTAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 22 >seq18898 Length=402 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||||| || || || || ||||| ||| | |||||| ||| || Sbjct 94 CACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCATCTTC 153 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| | || ||||||||||| || ||||| || |||||||||||| Sbjct 154 CAGCTGCTTGCCAGCGAATATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTG 213 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||||| ||||| | | || ||||||| ||| | || || Sbjct 214 GATCTTAGCCTTCACATTTTCGATAGTGTCAGAGGCTTCTACCTCGAGGGTGATTGTCTT 273 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| ||||| Sbjct 274 TCCCGTTAGGGTCTTCACAAAAATTTGCAT 303 >seq32636 Length=346 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || ||||| || || ||||| || ||| || ||||| ||| Sbjct 308 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTGCGACCATC 249 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||||| |||||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 248 TTCCAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTC 189 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||||| ||| || || | ||| | || Sbjct 188 CTGGATCTTCGCCTTTACATTCTCAATGGTGTCCGAAGGCTCCACTTCCAAGGTGATGGT 129 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || || || ||||| Sbjct 128 TTTACCAGTGAGGGTCTTCACGAAGATTTGCAT 96 >seq27267 Length=86652 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47170 GCTTCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGATTG 47229 || || ||||| || || ||||| ||||| ||| ||| |||| |||| || ||||| | Sbjct 7023 GCCTCGATGTTGCCGAGGTCGCCAACGTGGCGCACGGTGGCGGTGGGTGCACCGTGCTCC 6964 Query 47230 CGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 47289 | || || |||| ||||||| |||||||| ||||| | ||||||||||| Sbjct 6963 TGCTTGTTGGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTTGTATTGTCGCCGAAT 6904 Query 47290 TCGTGCACGTGAAATCCGTG 47309 ||||||||||| || ||||| Sbjct 6903 TCGTGCACGTGGAAGCCGTG 6884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 46984 CCGATTATGCCGCAGGCGATGCGACCGCCCGAGTTGCCGGTGGTCTTGCTCAATGGATGA 47043 ||||| | ||||||||||| ||| |||| | |||||||||||||||||| | ||| Sbjct 8000 CCGATCACACCGCAGGCGATACGAGCGCCAGCGTTGCCGGTGGTCTTGCTGAGCTCGTGA 7941 Query 47044 CCGCCGAGACCCAAGTCGTCGCGGTCCGAGTGAATGACCAGACTGCGTCCGATGACGCTG 47103 || || | || | ||||||| |||| | ||| | |||||| | || ||||||| |||| Sbjct 7940 CCCCCAATTCCAAGGTCGTCGGGGTCGGCGTGCACCACCAGAGTACGACCGATGATGCTG 7881 Query 47104 T 47104 | Sbjct 7880 T 7880 >seq28415 Length=359998 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 118616 CTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGT 118675 |||||| || ||||| || ||||||||||| ||| || ||| || | |||| ||| Sbjct 102240 CTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTCTCGATGGT 102299 Query 118676 GTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 118735 |||| | || ||||||| ||| | ||||| || || |||||||| || |||||||| Sbjct 102300 ATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGAGTTTTCACGAAAATCTG 102359 Query 118736 CAT 118738 ||| Sbjct 102360 CAT 102362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433510676485240