Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq20129 259 4e-64 seq33159 132 4e-26 seq32636 125 6e-24 seq18898 109 4e-19 seq36087 104 2e-17 seq33871 98.7 8e-16 seq26923 89.7 4e-13 >seq20129 Length=608 Score = 259 bits (286), Expect = 4e-64 Identities = 312/417 (75%), Gaps = 13/417 (3%) Strand=Plus/Plus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| || ||||||||||| | |||||| | ||||||| |||||||||||||||| Sbjct 63 ACTGGCCGCGGTGTATGAAGCAAAAACCCGAAGAATTGGCGGAAGCCGGTTTCTTCTACA 122 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| |||| ||||| || || |||||||| || ||||| || ||||||| |||||| Sbjct 123 CCGGCCACGGAGACAAAACGAAATGCTTCTACTGCGACGGTGGCCTGAAAGACTGGGAGA 182 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||| ||||| | | ||||||||| | ||||| |||||||| | Sbjct 183 ACGACGACGTCCCATGGGAGCAGCACGCGCGCTGGTTCGACAGATGCGCTTACGTTCAAC 242 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCG---TGT-TACCC 13451 | || ||||| | |||||||| || ||||| || |||| ||||||| | | || | Sbjct 243 TGGTAAAGGGCCGCGACTACGTTCAAAAAGTGATGTCGGAGGCCTGCGCCATCTCGACGC 302 Query 13452 GGTGAGAACACTACCGTGTCAACAGCCGCGCCAGTG-TCCGAGCCTATACCTGAGACAAA 13510 |||||| | | ||| || ||| | ||| ||| || | | ||| || Sbjct 303 CCAAAGAACA-GAAAGAGTCGACCCTGGCGGC-GTGCAGCGACCC---AGCAAAGAGTAA 357 Query 13511 AATTGAAAAAGAGCCCCA---AGTGGAAGATTCGAAACTGTGCAAGATATGCTACGTAGA 13567 || ||| |||||| | |||||||| || ||| | ||||||||||||||||| || Sbjct 358 AAGTGATAAAGAGGAGAATGTCGTGGAAGACTCTAAATTATGCAAGATATGCTACGTGGA 417 Query 13568 AGAGTGCATCGTGTGCTTCGTACCGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGC 13624 ||| ||| |||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 418 GGAGCGCAACGTGTGCTTCGTGCCGTGCGGGCACGTGGTGGCGTGTGCCAAGTGCGC 474 >seq33159 Length=163697 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 97000 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGACCATCCTCC 96941 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| |||||||| ||||||| ||| ||||| || || | |||||||||||| Sbjct 96940 AGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 96881 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| | | ||||| | ||||||||||| ||| || |||||| Sbjct 96880 ATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATAGTCTTG 96821 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||| ||||||||||| || ||||| ||| Sbjct 96820 CCGGTCAATGTCTTCACAAAAATCTGCATCTTG 96788 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| ||| ||| | || || Sbjct 97912 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTGCGTCCATCTTCT 97853 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||||| ||| ||||| || || | |||||||||||| | Sbjct 97852 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGA 97793 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| |||||| | | | || | ||| || |||| || || || || Sbjct 97792 ATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAATGTGATGGTTTTA 97733 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| ||||| Sbjct 97732 CCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||| || || || ||| ||||||||| ||||| ||||| ||| ||| | || || Sbjct 97685 TACTAAATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAGAGTGTGCGTCCATCTTC 97626 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 | || || || || || |||||||| || ||||| || || | ||| ||||| ||| Sbjct 97625 TAACTGCTTGCCAGCAAAGATCAACCGTTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 97566 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| ||| || | | | | | ||| | || || || | ||| || ||||| Sbjct 97565 GATTTTAGCCTTGACATTCTCGATGGTATCCGAAGGTTCAACTTCTAGGGTGATGGTCTT 97506 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| ||||||||||||||||||||| Sbjct 97505 ACCCGTCAAGGTCTTCACAAAGATTTGCATG 97475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| ||||||||||| ||| ||| | || || Sbjct 98140 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGTCCATCTTCT 98081 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||||| ||| ||||| || || | || ||||||||| Sbjct 98080 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 98021 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | ||||| ||| || |||| || || || || Sbjct 98020 ATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGACTTCCAGAGTGATGGTTTTA 97961 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| || || || ||||| ||||| Sbjct 97960 CCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 >seq32636 Length=346 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||| |||||| ||| |||| | || |||||||| Sbjct 299 GTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTGCGACCATCTTCCAGTTG 240 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || ||||| |||| ||||| ||||| ||||| | || ||||||||| || || Sbjct 239 TTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 180 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | ||||| | |||||| |||| ||| || || || || || Sbjct 179 CGCCTTTACATTCTCAATGGTGTCCGAAGGCTCCACTTCCAAGGTGATGGTTTTACCAGT 120 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||||||||| Sbjct 119 GAGGGTCTTCACGAAGATTTGCAT 96 >seq18898 Length=402 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| || ||||||||| || |||| | || ||| Sbjct 95 ACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCATCTTCC 154 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || |||||||||| ||||| ||||| ||||| | |||||||||||| Sbjct 155 AGCTGCTTGCCAGCGAATATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGG 214 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | || ||||| | ||| || ||||| Sbjct 215 ATCTTAGCCTTCACATTTTCGATAGTGTCAGAGGCTTCTACCTCGAGGGTGATTGTCTTT 274 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| || ||||||||||| |||||||| ||| Sbjct 275 CCCGTTAGGGTCTTCACAAAAATTTGCATTTTG 307 >seq36087 Length=321 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || ||| || || || ||||| ||| ||||||||| || |||||||| Sbjct 225 CCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 166 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || || || ||||| || ||||| || | ||||| ||||| || || Sbjct 165 AGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 106 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| ||||| ||| || | | |||| |||||| Sbjct 105 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCACT 46 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGC 45334 |||| || || ||||||||||| || || ||||||||||| ||| Sbjct 45 TCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq33871 Length=3159 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| ||| ||| | || || Sbjct 2917 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGTCCATCTTCT 2976 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||||| ||| ||||| || || | || ||||||||| Sbjct 2977 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 3036 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| | ||||| |||| ||| || || ||| Sbjct 3037 ATTTTAGCTTTGACATTCTCAATGGTGTCTGAAGGTTCCACTTCCAAGGTGATGGTTTTG 3096 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || ||||| ||||| Sbjct 3097 CCAGTTAGGGTTTTAACGAAGATCTGCAT 3125 >seq26923 Length=415599 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 12885 GAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTTTGTCGCCGGAAACC 12944 ||||| | ||| | || || || || |||||||| ||| || ||||||| ||| Sbjct 192510 GAAGAGGAGCGGCTCAAGACGTTCGACAAGTGGCCCGTGGACTTCCTGTCGCCCGAACAG 192569 Query 12945 ATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGCGTTGTGCGTTTTGT 13004 | || || || || || ||| | || | ||||||| || ||||| || |||||| Sbjct 192570 CTCGCGCGCAACGGCTTCTATTACCTCGGCCGTGGCGACGAAGTTCGTTGCGCCTTTTGT 192629 Query 13005 AAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCGACCATAAGAAGTGG 13064 ||||| || || ||||| ||| |||||||| || || || ||||| || ||| Sbjct 192630 AAAGTCGAAATCATGCGCTGGGTCGAGGGCGACGACCCTGCGAAAGACCACCAGCGTTGG 192689 Query 13065 GCTCCCCAATGTCCGTTTGTGA 13086 || || |||||||||||| ||| Sbjct 192690 GCCCCACAATGTCCGTTTTTGA 192711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394784038219870