Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq55175 241 1e-58 seq33159 118 8e-22 seq27463 105 5e-18 seq26923 95.1 9e-15 >seq55175 Length=171662 Score = 241 bits (266), Expect = 1e-58 Identities = 586/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Minus Query 91075 ACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCAATAATTATTTTACTAGAATCAACA 91134 || || ||||||||||| |||||||| || ||||| | | || || ||| | ||| Sbjct 39958 ACACCAGTCCAGCCGCGTCCGTACATAGCTACACCTACCACAATCTTCTTAGGGTTCACA 39899 Query 91135 CCTTGTTTT-GTGAGCATTTGCACGGCATGATGCGTGGTGTACAACTCGTTCGGGTTCCA 91193 ||||| || | |||| || || || ||||| || || || || ||||| Sbjct 39898 CCTTGAGCAAGTAAATATTTA-ACACCAAAATCAGTGGTATAAGTTTCTTTGGGATTCCA 39840 Query 91194 TTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAATCGGTATTTGACCAAGCTCCTTTAAA 91253 | ||||| ||||| | || |||| || | | || ||||| || ||||| || Sbjct 39839 TGCAGGGGCATATAGGGGAGTCTGATGACCGAGGGTGTCGTTGGACCAGGCACCTTTGAA 39780 Query 91254 ATCGTAAGTCATGACATATATTTTACTCAAAAACTTTTGTGCAGCGTCATAATCGACAAG 91313 |||||| |||||| | || | || | ||||||| || || ||||| || | Sbjct 39779 GTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTGGGCTTCGCTGTAATCTACGAC 39720 Query 91314 TTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTCAATTCGTACACTTTACCTGTTTG 91373 || ||||| || | || |||| || || || | ||||| ||||| |||| Sbjct 39719 TTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAGCTCGTATTTCTTACCCGTTTC 39660 Query 91374 TGCTTGCAAA--TCATCCAACATGTCACGCAACTCTTTTAGCAAAACAATGTATGTAGCA 91431 | | | ||| || | ||||| || |||||||| || | | ||| || | Sbjct 39659 TTC--GGAAAGCTCGTTTAACATTTCGCGCAACTCCTTCATTAGTTCAACATAAACTTCT 39602 Query 91432 GCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCTTTACCGCCCGGAAATTCCCAA 91491 | || |||||| |||| | | || ||||| || |||||||| || ||||||||| Sbjct 39601 CCATC---TTTCGGGCTACCAAGGTCGGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAA 39545 Query 91492 TCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAATTCTTTAACCGAATCAACG 91551 || || || ||||| || || || ||||| ||| | || ||||| || ||||||||| Sbjct 39544 TCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAAGGAAATCTTTCACAGAATCAACG 39485 Query 91552 AACACGT--TTCTTC-GTTTGACATCGTGCATAAAATAGAACGGGTCCGACAAAGTCCAG 91608 || || |||| |||| || ||| | ||| |||| || || | | ||||||| Sbjct 39484 AAGCGGTCCCGCTTCACTTTGTCA--GTG-AAAAAGAAGAAAGGATCAGCAAGAGTCCAG 39428 Query 91609 CCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGGCCAACTTGGCGGCCATTATCTGA 91668 || || ||||| |||| | ||| | | ||| | || || || ||| | |||| Sbjct 39427 CCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGTTTAAGGGACATCAGCTGA 39368 Query 91669 CCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACACCTTTTTGTGGTTTTTGTATG 91728 ||||| ||||| |||||||| || ||||||| || | || || ||||| ||||| | Sbjct 39367 CCAAAATTGCCTTTGTAAGGTTCATTCCAAGAAGACAAGCCCTTCTGTGGCTTTTGAAGA 39308 Query 91729 GCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCGCGTCCTTTGCACGATCGTTGC 91788 || ||||| |||||||| |||||||| || ||||| || || || |||| || || || Sbjct 39307 GCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCACGGCCACTGCATGAACGCTGA 39248 Query 91789 AAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCATCGTTTAATCCATCGCCTCCGCAA 91848 | | || |||||| || ||| || | || || | ||||||||||| ||| Sbjct 39247 AGAGCTTGAAAACTGCCTTCGATTTCCTTTAAACTGTCATTGATGCCATCGCCTCCACAA 39188 Query 91849 ATGGGTATAAAACCGTACAACAGATGGGACAAATTTGGCAGCGGCACCTTGTCGATTGGA 91908 || || |||||||| ||||| ||||| | || ||| || | || | |||| ||| Sbjct 39187 ATTGGAATAAAACCATACAAAAGATGAGTCAGATTAGGAATTGGTATACGATCGACTGGG 39128 Query 91909 AAGTTGCGTCCGTACACGCCCCATTCAACAAAGTACGC 91946 || || ||| ||| || |||||||| || ||||| || Sbjct 39127 AATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAGC 39090 >seq33159 Length=163697 Score = 118 bits (130), Expect = 8e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||||||| |||||||||||||| |||||||||| | ||| || |||| Sbjct 97459 AGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCT 97400 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || |||||| ||||||| | ||| ||||| ||| | |||||||||||| Sbjct 97399 TCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTATCT 97340 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| |||| || || | ||| ||||| || || || | ||||| | Sbjct 97339 TGAATTT-TTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCACCTCTAATGTGATAGT 97281 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || | |||||| |||||||| |||||| Sbjct 97280 CTTCCCTGTTAGTGTTTTAACAAAAATCTGCATT 97247 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | || |||| |||||| || || || || || ||||||||||| | Sbjct 97018 CCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 96959 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| |||| |||||||| || |||| | || || || || ||| Sbjct 96958 AGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 96899 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || || | | || || || | | ||| ||||| ||||| Sbjct 96898 ATGCCCTCCTTGTCCTGGATCT-TAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCAC 96840 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| | |||||||||||||| || |||||||| ||||| || Sbjct 96839 CTCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATCTT 96789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | || || | |||||| || ||||| || || || |||||||| | Sbjct 97247 TCCTCCTCTTAAACGGAGGACTAAGTGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGA 97188 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | ||| ||||| |||||||| ||| |||| | || || || || ||| Sbjct 97187 CAATGTACGTCCATCCTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 97128 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| || | ||| || | | ||| ||||| ||| || Sbjct 97127 AATGCCTTCCTTATCTTGGATCTTCGCCTTAACATTTTCAATTGTGTCGGAGGGTTCAAC 97068 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || || ||||| ||||| || ||||| ||||| Sbjct 97067 TTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACGAAAATCTGCAT 97020 >seq27463 Length=372575 Score = 105 bits (116), Expect = 5e-18 Identities = 172/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || | |||| ||||||||||||||| || || ||||||||||| | | Sbjct 145639 CCTCCTCGAAGCCTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 145698 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||| |||||||| || |||| | |||||| ||||| || Sbjct 145699 AAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 145758 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| || || || ||||| | || || || | | | | ||||||| || || Sbjct 145759 ATGCCCTCTTTGTCTTGAATTT-TCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAAC 145817 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTT 18337 || | || ||| |||| || || | ||||| || || || |||||| ||||||| | Sbjct 145818 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCATTGTTAAACTGTA 145877 Query 18338 ATAAA 18342 | ||| Sbjct 145878 AAAAA 145882 >seq26923 Length=415599 Score = 95.1 bits (104), Expect = 9e-15 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 20400 CGTTGCGTATTAAA---GGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGT 20456 ||| |||| | ||| ||||| || || ||||| ||||| |||||||| ||||||| Sbjct 192720 CGTGGCGTCTCAAAAACGGACATTGTGGGGCCCAACGCTGGTGGTCTTTCGCAGGGTCGT 192661 Query 20457 CGCCTTCTTGCCAATGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGC 20516 |||| || ||| |||| ||||| ||||| ||||| || || || |||||||| | | Sbjct 192660 CGCCCTCGACCCAGCGCATGATTTCGACTTTACAAAAGGCGCAACGAACTTCGTCGCCAC 192601 Query 20517 GCCCCAAATAATAGAACCCGTTG 20539 | || | |||||||| |||||| Sbjct 192600 GGCCGAGGTAATAGAAGCCGTTG 192578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379064431770150