Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq28771 105 1e-17 seq39759 84.2 4e-11 >seq28771 Length=922144 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 ||| | ||||||| ||| || |||||||| || ||||||||||| |||||| Sbjct 289482 AGAAATAATCCAGCTGACAGGAGGATGATAATATGTGCATGGAATCCATCAGATCTTGGT 289541 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTT-ATGTGGCTAATGGAGAATT 35634 || ||||| || || |||||||| || || || | ||| ||||||| |||||||||| Sbjct 289542 CTAATGGCACTACCACCATGCCAT-TGTCTTATCCAGTTTCATGTGGCAGATGGAGAATT 289600 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||| ||| | ||||||| | |||| ||| | || | || ||||| || |||||||| Sbjct 289601 GTCATGCTTGATGTATCAAAGGAGCGCGGATATGGGACTAGGTGTGCCTTTTAATATTGC 289660 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGC 35724 ||||| ||| | || || |||| || Sbjct 289661 CAGTTACTCACTTTTAACACACATGATTGC 289690 >seq39759 Length=128263 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||||| ||||| || ||||||||||| || || ||||||||||||||| || || Sbjct 67196 TTTGG-GGAACGGATAGTTGCCTTTGCAGCTGTAGAAGGAATCTTCTTTTCCGGAAGCTT 67254 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || || || |||||| | ||||| |||| | |||| ||||| || | | |||||| Sbjct 67255 TGCCTCAATATTCTGGTTGAAGAAGCGGGGCTTGATGCCCGGTCTGACTTTCAGCAATGA 67314 Query 102022 GTTCATTTCTAGGGACGA 102039 | | |||||||| || || Sbjct 67315 GCTAATTTCTAGAGATGA 67332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988817298148850