Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq34861 517 1e-141 seq39759 102 1e-16 >seq34861 Length=230841 Score = 517 bits (572), Expect = 1e-141 Identities = 1194/1792 (67%), Gaps = 22/1792 (1%) Strand=Plus/Plus Query 62028 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62087 |||||| || || | ||||| ||||| | | | || ||||| | || | || Sbjct 60363 ATTTTAGATTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAA 60422 Query 62088 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62147 |||||||||||||| ||||| | ||||| | ||||| || || || | ||| | Sbjct 60423 TACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCA 60482 Query 62148 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62207 ||| |||| || || | ||| || || | ||||||||||||||| || || || || ||| Sbjct 60483 TAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTG 60542 Query 62208 TCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGC 62267 || ||||||||||| || | || || | ||||||||||| ||||||||| | | | Sbjct 60543 TCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGT 60602 Query 62268 TTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTA 62324 ||||||| | ||||| | | |||| ||||| || ||| | || ||| | Sbjct 60603 CTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGAACCATTGTTATGAATTATCTGA 60662 Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| || || |||| ||||| | | || || || ||| | | ||| |||| Sbjct 60663 TTCTTCATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTT 60722 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || ||||| ||||||||||| || || | | |||||| || ||| | ||||| Sbjct 60723 ACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCA 60782 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | || |||||||||||||| ||||| || || ||||| || ||||| || || | || Sbjct 60783 AATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAA 60842 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | ||| | ||| || ||| | ||||| || |||| | ||| | ||| ||| Sbjct 60843 AGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCACAGA 60902 Query 62565 TCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCC 62623 || | || | |||||| | || || | || || | || ||| Sbjct 60903 TCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACT-TCC 60961 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 | |||| ||| ||| ||| | || || || |||| ||||| || |||||||| || Sbjct 60962 TTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCC 61021 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG 62743 ||| || || ||||||||||| | | || || | ||| || || ||| |||| Sbjct 61022 GTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATATGG 61081 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 | | || | ||| | || ||||| ||||| || |||||||| || ||||| || Sbjct 61082 AATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTGTG 61141 Query 62804 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 || | | ||||| | | |||||||| | || || || |||| ||| || |||||||| Sbjct 61142 TCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTTATT 61201 Query 62864 GAGATT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 ||||| | || | | ||| | || || |||| ||| ||||| | || || Sbjct 61202 TAGATTCTGTGTTATTGTCTTCGTG-ACTTCTTTCAATTTTGTAAAATTATATGTTTTAT 61260 Query 62923 CT--ATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAG 62979 || |||| |||| | || || |||| || |||| ||||| || || || |||| | Sbjct 61261 CTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATCTG 61320 Query 62980 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 63039 | | ||||| | || ||||| || | |||||| || || || || || | ||||| Sbjct 61321 CTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGATTTT 61380 Query 63040 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099 ||||||||| ||| | ||||| | ||| || || || ||| |||| || || ||||| | Sbjct 61381 TTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCGA 61440 Query 63100 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTA 63154 || | ||||| || || ||||| | || |||| ||| ||| || | Sbjct 61441 CTTGTGCCTCTATTATTGCCTTCCACAGTTCTTGAGCTCGAACTTGCTTAACGA-----A 61495 Query 63155 TCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63214 ||| |||| ||||||| ||| ||| ||| || || ||||||||| | | | Sbjct 61496 CCTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACAGTCGGC 61555 Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274 | | ||| || || | || ||||| || |||| | | || | | || || || Sbjct 61556 AAGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGGTT 61615 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 |||||| | |||||||||||| | ||| ||||| ||||||| ||| || || || Sbjct 61616 CATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCTTT 61675 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || ||||||||||| ||||| | ||| | | || |||||||||||| ||||| ||||| Sbjct 61676 ACCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAGTA 61735 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 || || | | | || || ||||| || ||||| || || | || ||||| || ||||| Sbjct 61736 AATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTATT 61795 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 || |||||||||||||| | || ||| || || | || || ||||| | || ||| Sbjct 61796 GTACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAGGT 61855 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 || | | | ||| | || || || || || || || ||| || ||||| Sbjct 61856 ACCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAATTAA 61915 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTA 63633 ||| ||| ||||||| |||||||| || ||||| ||||||||||| ||| || || | | Sbjct 61916 TGCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTATG-A 61974 Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 | || || ||| | ||| | | | |||| | ||| || || || ||| || | Sbjct 61975 GGAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGCAT 62034 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 | || || ||||||| || | | ||||| || || || |||| || || || Sbjct 62035 GAGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTCAC 62094 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 ||| || || | | ||| ||||||| ||| ||||| ||||||||| |||| Sbjct 62095 CATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCAGCAAT 62146 Score = 113 bits (124), Expect = 6e-20 Identities = 121/159 (76%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 64010 AAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGC 64069 |||| |||| || ||||| ||||||| ||| ||||| |||| ||| || |||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 64070 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129 ||||||||| || | |||||| ||||||||| | || || || | | |||||||||| Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 64130 TACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64168 || |||||||||||| || ||||| | ||||| || Sbjct 64214 CACAGTTGTTACTCCAGAGTAAATTCCATTGATAACTTT 64252 >seq39759 Length=128263 Score = 102 bits (112), Expect = 1e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||| ||||| || || || || || |||||||| | ||| ||||| | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| ||||| || || || |||||||||||||||||||||||| || ||||||| Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 33724 CAATAAGTCTCTCTCCATAACCGGC-GCTGTCATG--TATCCACTTTTGAGCCCAATCGG 33780 ||| | | || ||| | || | | | || ||||| | | ||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 |||| || |||||||| || | ||||| || ||||| || Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 Score = 100 bits (110), Expect = 4e-16 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 33851 ATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGA 33908 ||||||||| |||| || || || ||| || || || | || || || || || || Sbjct 66885 ATAAGTATCAATCAGCAATGAGTA--CATCTCTGAGTGTACATTCTCCATAGCAATTTGG 66828 Query 33909 AATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAA 33968 ||||| || || | || || || ||| || |||||| |||||||||| | || Sbjct 66827 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAG 66768 Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 |||||||| ||||| |||||| || |||||||| |||||||||||||| ||||| Sbjct 66767 TTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||||||||| ||||||||||| ||||| || || || ||||| ||||| | | Sbjct 66150 TTGGATAAATCCACTTCCTCCACTGTCCAGAATGAAGCTTCAGCTTTTTTGTACATTTGC 66091 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||||| ||| |||||||||| ||||| || || || Sbjct 66090 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 66056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629341536621600