Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq34861 666 0.0 seq39759 95.1 1e-14 >seq34861 Length=230841 Score = 666 bits (738), Expect = 0.0 Identities = 1229/1780 (69%), Gaps = 34/1780 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||| | || | ||| | || | |||| | | || ||||||||||| ||| Sbjct 60375 TCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAATACATTCCCGTT 60434 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || |||| | ||||| | ||||| || || |||| || | || | || | | Sbjct 60435 TTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCATAATTCGGTTCA 60494 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | |||||||||||||||||||| ||||||||||| || |||||| Sbjct 60495 GCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTGTCAGCAGCCATT 60554 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | ||| ||| || |||||||| |||||||| | |||| | |||| | | Sbjct 60555 TTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGTCTAATATCCTTT 60614 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGT---ATTCTTTATG 37083 || | || | || ||||||||||||||| | || | ||| | |||||| ||| Sbjct 60615 GGAATCCGCTCAATATTTTGAATAGAACCATTGT-TATGA--ATTATCTGATTCTTCATG 60671 Query 37084 TCATTATTCCACATATTT--CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 || | || ||| | || | || | | ||| ||| ||| | || | |||||||| | Sbjct 60672 TCTTCATCCCATAGATCTGCCTGCGTCA-AGT-CTCGCAACAAATGATGGTTTACAACTT 60729 Query 37142 GAAAATCTCCAGATAATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGA 37199 |||| ||||||||||| || | |||| ||| || | ||| | ||| ||||||||| || Sbjct 60730 GAAATTCTCCAGATAAAACACGTCTTTGGTAAATGT-TTGAT-GTAAATGGTTCAAATGA 60787 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 |||||||| | || ||||| | ||||||||| || |||||||| |||| || ||| Sbjct 60788 TTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAAAGTGA 60847 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 ||| | | ||||| | | |||| | | |||| || |||| ||||| | ||| || Sbjct 60848 ATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCACAGATCAGT 60907 Query 37320 TGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATA 37379 ||| | || ||||||||||||||| | || || | || || ||| | | ||| Sbjct 60908 TGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACTTCCTTCATA 60967 Query 37380 TGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATA 37439 || |||| ||| | ||| || ||||||||||| | ||||| ||| | || || Sbjct 60968 AGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCCGTAGTA 61027 Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCC 37499 ||||||||| || |||||| || | | | |||| ||||| || || ||| | || Sbjct 61028 TATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATATGGAATGCG 61087 Query 37500 CAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTT 37559 || | || ||| ||| || ||||| || || || |||||||| ||||| ||| | | Sbjct 61088 CATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTGTGTCGCAT 61147 Query 37560 ATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 ||||| | | |||| |||||| || || || | ||| || |||||||||||||| Sbjct 61148 GTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTTATTTAGATT 61207 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTA---TTATT 37676 | || | | ||||| | | | |||| || || || || ||| | ||| Sbjct 61208 CTGTGTTATTGTCTTCGTGACTTCTTTCAATTTTGTAAAATTATATGTTTTATCTTCATT 61267 Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736 ||||||| || | |||| ||| || | | ||||| || |||||||||||| | | | Sbjct 61268 AACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATCTGCTGAAGT 61327 Query 37737 AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATT 37796 | ||| | ||| || ||||| | |||||| || |||| || || | ||| ||||||| Sbjct 61328 ATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGATT 61387 Query 37797 GGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 |||| ||||||| |||||||| || || || || || || ||| ||| | ||| || Sbjct 61388 ACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCGACTTGTGC 61447 Query 37857 CTCGATAATAGATTTCCATAAACTTCTT--GCTTTAACGATCGCTT---TAAtttttttC 37911 ||| || || | |||| | | ||||| ||| ||| | |||| || | ||| Sbjct 61448 CTCTATTATTGCCTTCC--ACAGTTCTTGAGCTCGAAC--TTGCTTAACGAACCTCTTTT 61503 Query 37912 TTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCC 37970 || |||||||| | ||||||| | || |||| ||| ||| ||| ||| | || Sbjct 61504 CCTG-TTCGTATTTTTCATATAATGT-TTCAAATTCTTCTCCCCAACAGTCGGCAAGACC 61561 Query 37971 TGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAA 38030 || || ||| || ||||||| | ||| |||||||||||| || || | |||||| Sbjct 61562 AGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGGTTCATAAA 61621 Query 38031 TAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTAC 38090 ||||||||| | |||||| ||| |||||| ||| | | ||| ||||| || || Sbjct 61622 TAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCTTTACCAGT 61681 Query 38091 ATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCG 38149 ||||||| || || | || ||| || || | ||||| ||||| ||||||| ||||| | Sbjct 61682 ATTCTTT-TTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAGTAAATTG 61740 Query 38150 ACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATA 38209 | || ||||||| ||||| ||||| || | || ||| ||| |||| ||||| || | Sbjct 61741 CGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTATTGTACA 61800 Query 38210 TTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCT 38269 ||| ||||| ||||| | |||||| || ||||| |||| | ||| || ||||| | Sbjct 61801 CTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAGGTACCTT 61860 Query 38270 TAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGC 38329 | | || ||| | | | ||| || ||||| || ||| || ||||| || | Sbjct 61861 TTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAATTAATGCAC 61920 Query 38330 ATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAAC 38389 |||||||||| || ||| |||||||||| || || ||||| || |||| || | || | Sbjct 61921 ATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTATGAGGAAGC 61980 Query 38390 AACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGA 38449 || ||| | ||| || ||||||| | || || ||||| ||| |||||| ||| Sbjct 61981 AAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGCATGAGTGA 62040 Query 38450 ACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAA 38509 | ||||||||||||| | || || |||||||| | |||| || || | || || | Sbjct 62041 AATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTCACCATGGA 62100 Query 38510 TACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | || | ||| || | |||||||||||| ||||||||||| Sbjct 62101 TCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTC 62140 >seq39759 Length=128263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| || | ||| ||||| || | || ||||| ||||| || | ||| |||||||| Sbjct 66894 ATCCCTGATATAAGTATCAATCAGCAATGAGTACATCTCTGAGTGTACATTCTCCATAGC 66835 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||| |||||||| || | | ||| || | || || || |||||| ||| Sbjct 66834 AATTTGGAATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTC 66775 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | || || ||||| || ||||||||| || ||||||||||| | || |||||| || Sbjct 66774 CACCAAGTTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAAT 66715 Query 12070 AAAGT 12074 ||||| Sbjct 66714 AAAGT 66710 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/221 (68%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||| ||||| ||||| || || | ||||||||||| || || || || Sbjct 67332 TCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCTTC 67273 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| || |||||||| ||||| || ||||||||||| || Sbjct 67272 AACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGGCA 67213 Query 11774 ACTACTCTTTCTCCA---TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCT 11830 |||| | ||| ||| | | | | || || ||||||| ||||| || || Sbjct 67212 ACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTGCC 67153 Query 11831 TTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 || || ||||| ||| | ||||| || || || ||||| Sbjct 67152 TTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAATAA 67112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468170653816800