Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq34861 506 3e-138 seq39759 102 1e-16 >seq34861 Length=230841 Score = 506 bits (560), Expect = 3e-138 Identities = 1192/1794 (66%), Gaps = 22/1794 (1%) Strand=Plus/Plus Query 64821 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 64880 |||||| || || | ||||| ||||| | | | || ||||| | || | || Sbjct 60363 ATTTTAGATTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAA 60422 Query 64881 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 64940 |||||||||||||| ||||| | ||||| | ||||| || || || | ||| | Sbjct 60423 TACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCA 60482 Query 64941 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 65000 ||| |||| || || | ||| || || | ||||||||||||||| || || || || ||| Sbjct 60483 TAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTG 60542 Query 65001 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC 65060 || ||||||||||| || | || || | ||||||||||| ||||||||| | | | Sbjct 60543 TCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGT 60602 Query 65061 TTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTA 65117 ||||||| | ||||| | | |||| ||||| || ||| | || ||| | Sbjct 60603 CTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGAACCATTGTTATGAATTATCTGA 60662 Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 ||||| || || |||| ||||| | | || || || ||| | | ||| | || Sbjct 60663 TTCTTCATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTT 60722 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || ||||||||||||||||| || || | | |||||| || ||| | ||||| Sbjct 60723 ACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCA 60782 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | || |||||||||||||| ||||| || || ||||| || ||||| || || | || Sbjct 60783 AATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAA 60842 Query 65298 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 | ||| | ||| || ||| | ||||| || |||| | ||| | ||| ||| Sbjct 60843 AGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCACAGA 60902 Query 65358 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 65416 || | || ||| | || || | || || | || ||| Sbjct 60903 TCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACT-TCC 60961 Query 65417 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 65476 | |||| ||| || ||| | || || || ||||| ||||| || |||||||| || Sbjct 60962 TTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCC 61021 Query 65477 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGG 65536 ||| || || ||||| ||||| | | || || | ||| || || ||| |||| Sbjct 61022 GTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATATGG 61081 Query 65537 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 65596 | | || | ||| | || ||||| ||||| || |||||||| || ||||| || Sbjct 61082 AATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTGTG 61141 Query 65597 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 65656 || | | ||||| | | |||||||| | || || || |||| ||| || |||||||| Sbjct 61142 TCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTTATT 61201 Query 65657 GAGATT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT 65715 ||||| | || | | ||| | || || |||| ||| ||||| | || | || Sbjct 61202 TAGATTCTGTGTTATTGTCTTCGTG-ACTTCTTTCAATTTTGTAAAATTATATGTTTTAT 61260 Query 65716 CT--ATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 65772 || |||| |||| | || || |||| || |||| ||||| || || || |||| | Sbjct 61261 CTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATCTG 61320 Query 65773 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 65832 | | ||||| | || ||||| || | |||||| || || ||||| || | ||||| Sbjct 61321 CTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGATTTT 61380 Query 65833 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 65892 ||||||||| ||| | ||||| | ||| || || || ||| |||| || || ||||| | Sbjct 61381 TTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCGA 61440 Query 65893 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTA 65947 || | ||||| || || ||||| | || |||| ||| ||| || | Sbjct 61441 CTTGTGCCTCTATTATTGCCTTCCACAGTTCTTGAGCTCGAACTTGCTTAACGA-----A 61495 Query 65948 TCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 66007 |||||||| ||||||| | ||| ||| ||| || || ||||||||| | | | Sbjct 61496 CCTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACAGTCGGC 61555 Query 66008 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067 | ||||| || || | || ||||| || |||| | | || | | || || || Sbjct 61556 AAGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGGTT 61615 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTT 66127 |||||| | |||||||||||| | ||| |||||| ||||| | ||| || || || Sbjct 61616 CATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCTTT 61675 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 || ||||||||||| ||||| | ||| | | || |||| ||||||| ||||| ||||| Sbjct 61676 ACCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAGTA 61735 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 || || | | | || || ||||| || ||||| || || | || ||||| || ||||| Sbjct 61736 AATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTATT 61795 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 || |||||||||||||| | || ||||||||| || || || || | || ||| | Sbjct 61796 GTACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAGGT 61855 Query 66308 TCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 || ||| | ||| | || || || || || || || ||| || ||||| Sbjct 61856 ACCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAATTAA 61915 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTA 66426 ||| ||| ||||||| || ||||| || || || || |||||||| ||| || || | | Sbjct 61916 TGCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTATG-A 61974 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 | || || ||| | ||| | | |||| | ||| || || || ||| || | Sbjct 61975 GGAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGCAT 62034 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | || || ||||||| || | | ||||| || || || |||| || || || Sbjct 62035 GAGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTCAC 62094 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 66600 ||| || || | | ||| ||||||| ||| ||||| ||||||||| | |||| Sbjct 62095 CATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCAGCAATCT 62148 Score = 116 bits (128), Expect = 5e-21 Identities = 122/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 66803 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGC 66862 |||| |||| || ||||||||||||| ||| |||| |||| ||| || |||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 66863 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 66922 ||||||||| || | |||||| ||||||||| | || || || | | |||||||||| Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 66923 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 66961 || |||||||||||| || ||||| | |||||| || Sbjct 64214 CACAGTTGTTACTCCAGAGTAAATTCCATTGATAACTTT 64252 >seq39759 Length=128263 Score = 102 bits (112), Expect = 1e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||| ||||| || ||| || || || |||||||| | ||| ||||| | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| ||||| || ||||| ||| |||||||| ||||||||||| || ||||||| Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCA-TG--TATCCACTTTTGAGCCCAATCGG 36356 ||| | | || ||| | ||| | | | || ||||| | | ||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||| || |||||||| || | || || || ||||| || Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 Score = 100 bits (110), Expect = 4e-16 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 36427 ATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGA 36484 ||| |||||||||| || || || ||| || || || | || || || || ||||| Sbjct 66885 ATAAGTATCAATCAGCAATGAGTA--CATCTCTGAGTGTACATTCTCCATAGCAATTTGG 66828 Query 36485 AATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA 36544 ||||| || || | || || || ||| || |||||| |||||||||| | || Sbjct 66827 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAG 66768 Query 36545 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 |||||||| ||||| || ||| || |||||||| |||||||||||||| ||||| Sbjct 66767 TTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 || |||| ||||||||| ||||||||||| ||||| || || || ||||| ||||| | | Sbjct 66150 TTGGATAAATCCACTTCCTCCACTGTCCAGAATGAAGCTTCAGCTTTTTTGTACATTTGC 66091 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||||| ||| ||||||| || || || || || || Sbjct 66090 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 66056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657675303634800