Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq55175 250 2e-61 seq34861 152 5e-32 seq33159 131 2e-25 seq21507 98.7 1e-15 seq36087 91.5 1e-13 seq27267 86.0 6e-12 >seq55175 Length=171662 Score = 250 bits (276), Expect = 2e-61 Identities = 878/1344 (65%), Gaps = 48/1344 (4%) Strand=Plus/Minus Query 20123 TGTTGATAGCGTTTAAAAGGTCACCGTTGTCCGCGTCGATCTCCCAAGCGAACACACCCG 20182 |||| ||||||||||| || || || ||||| || ||||||||||| ||||| | ||| Sbjct 40266 TGTTCATAGCGTTTAACAGTTCGCCATTGTCTGCATCGATCTCCCACGCGAATAGACCGC 40207 Query 20183 CCAACTCGTGGTCCACCACGTACTTTGTTTTATCGGCCACCGATTTTGGATCGTCGTACG 20242 ||| | | || ||| ||||| ||| || |||| |||| |||||||| Sbjct 40206 CCAGTTTATTGTTTCTCACATACTTGCCTTTCTCAATAGTCGATCGCGGATTGTCGTACG 40147 Query 20243 ACACAAGATTACCGTCCGACTTGC--GATACACGAATGCCGCTTTGGCCACTTCGTCGTA 20300 | || | |||| ||| | || || |||| ||| |||| || || | |||||| Sbjct 40146 TTATTAGGTCACCGGTCGA-TGGCCTGA-ACACATATGGGGCTTCTGCAACGTTGTCGTA 40089 Query 20301 GGTGTAATCGTATGTGGTCA----AATTG--TGCACAATCTGCCGGTAATCGACCACACC 20354 | | || || || || |||| | | || | || |||||| || ||||| Sbjct 40088 ATGGAACTCCCATTTGCCCATAGCAATTTCATTTGCTATTTCCCTGTAATCAACAACACC 40029 Query 20355 GTCTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAAAGGATTATCACTATC 20414 || | ||| || || || || || ||||| |||| | ||| ||||| | || || Sbjct 40028 ATCCTGCCATGTACCTTTTACTGGTCCTGTGGCGTTGCCAGTGAATGGATTGTTACCTTC 39969 Query 20415 G---CTCTTCACACCGGTCCAACCGCGCCCGTACATTGCTACACCCAGTGCAATTTTACT 20471 | | ||||| ||||| ||||| |||||||| |||||||| | |||| || || Sbjct 39968 ATAACCGTGTACACCAGTCCAGCCGCGTCCGTACATAGCTACACCTACCACAATCTT-CT 39910 Query 20472 TTTTGGT-ACGTGTTGCGCGAGCAACGCTTCTACGGCACGATCTGCGCAATAAGGTTCGT 20530 | | | || ||| || || || || || || ||| | | ||||| ||| | Sbjct 39909 TAGGGTTCACACCTTGAGCAAGTAAATATTTAACACCAAAATCAGTGGTATAAGTTTCTT 39850 Query 20531 CGGGTTTCCAGGCGGGTGCAAACAATGCGGTTTGATGTCCCAGATCCGTAGT-GGACCAG 20589 ||| ||||| || || ||| | | | || ||||| || || || || ||||||| Sbjct 39849 TGGGATTCCATGCAGGGGCATATAGGGGAGTCTGATGACCGAGGGT-GTCGTTGGACCAG 39791 Query 20590 GCTCCTTTGAAATCGTACGACATTAAGAATATGGTATCGAGGTATTTTTGCGCTTCGGTG 20649 || |||||||| ||||| ||| | ||| ||| || | || ||||| |||||| || Sbjct 39790 GCACCTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTGGGCTTCGCTG 39731 Query 20650 TAATCGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCGCTCGTCAACAGATAGTAA 20709 ||||| || || ||||||||| || || || || || || | | | ||| Sbjct 39730 TAATCTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAGC---TCGTAT 39674 Query 20710 CGATTGTGA----TGTATGCCGAGGGC--GTCGAGCATGCCGCGAAGTTCACGCAGCAGG 20763 || | | | | | | || || || | ||| |||| | || || || Sbjct 39673 ---TTCTTACCCGTTTCTTCGGAAAGCTCGTTTAACATTTCGCGCAACTCCTTCATTAGT 39617 Query 20764 --ATCGTGTACGTGGCTCGATCGCGTTCGGCGTCGCCGACATTGGGGTTCGCGCCATTGC 20821 | | | || | ||| ||| ||||| | || | | |||||| || || || | Sbjct 39616 TCAACATAAACTT--CTCCATCT--TTCGGGCTA-CCAAGGTCGGGGTTAGCTCCCTTAC 39562 Query 20822 CGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAGAATTTCCACGTTTCTAGATACT 20881 |||| || || |||||||| ||||| || ||||| ||||| ||||| |||| || | | Sbjct 39561 CGCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAAGGAAAT 39502 Query 20882 CTTGGACCGAATCGATAAACGTTTGGCGCACGATCTTGTC-GTGCATATGGAAAAATGGG 20940 ||| || ||||| | || | ||| | ||||| ||| | | | | ||| || Sbjct 39501 CTTTCACAGAATCAACGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAAGAAGAAA-GGA 39443 Query 20941 TCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTTGAGATGCGGGTTCGCCAATTTC 21000 || | ||| ||||||||||| || || |||| | ||| || | ||| | || ||| Sbjct 39442 TCAGCAAGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGTTTA 39383 Query 21001 GCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATGCGCTGACA--CCTT 21058 || ||| || || ||||| ||||||||||| ||||| ||||| | |||| || | Sbjct 39382 AGGGACATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAA--GACAAGCCCT 39325 Query 21059 TCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACCTTAAAGTCGGCACGGC 21118 |||| || || || | || ||||| ||||||||||||| ||||| || || |||||| Sbjct 39324 TCTGTGGCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCACGGC 39265 Query 21119 CCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGA-CACTTTTGAGCGCATCGTTG 21177 | ||| ||||| || | |||| |||||||| || | ||| | | || ||| Sbjct 39264 CACTGCATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTTAAAC-TGTCATTG 39206 Query 21178 ATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATGCGACAAGTTCGGTGTG 21237 ||||| |||||||| || || || | ||||| ||||| | ||| | || || || | Sbjct 39205 ATGCCATCGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGATTAGGAATT 39146 Query 21238 GGCACTTTATCGACGGGAAACTGGCGCGGATACACACCCCATTCGACAAAGTATGCTCCA 21297 || | |||||| || || | || || || ||||||||||| || ||||| |||||| Sbjct 39145 GGTATACGATCGACTGGGAATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAGCTCCA 39086 Query 21298 ATGATCTTGTCCGAGCGCTTTTCGAAACGTTTATTGTTTTCGAGATAATCGTAGAC--GA 21355 | | ||| |||| || || || | |||| ||||| || ||| || | Sbjct 39085 ACAACTTTGCCCGAAGTCTGTTTAAATGGCTTAT--TTTTCTCTCCAAGGGTATACATTA 39028 Query 21356 GCGGCGCGAGATGCGAGCCGTCCGTGTCGGCCACGACGACTTTAACCGGTGCGCTAGTCG 21415 || | ||||| |||||| || || || ||||||| || | | | || |||| Sbjct 39027 ATGGAGGTAGATGACTGCCGTCGGTATCAGCTACGACGATTTCAGTGAGCTCACTCGTCG 38968 Query 21416 AACAGCCGTCGACGTTGCACAGTT 21439 | || ||||| | |||||||||| Sbjct 38967 AGCATCCGTCAGCATTGCACAGTT 38944 >seq34861 Length=230841 Score = 152 bits (168), Expect = 5e-32 Identities = 477/730 (65%), Gaps = 9/730 (1%) Strand=Plus/Plus Query 153070 GGTTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTAC-TGTGAAAC 153128 |||| |||||||||||||| || || || |||||||| | | || ||| ||| Sbjct 60718 GGTTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGT-AAAT 60776 Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 |||||||| || || || || | |||||||| || | ||||| ||||| || Sbjct 60777 GGTTCAAATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCT 60836 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCC 153248 | | | ||||| || | ||| | ||| || || ||| || | ||||||| Sbjct 60837 AATAAAAGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCC 60896 Query 153249 CATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTG 153308 || | ||| || | || ||||| ||| |||||||| || || ||||| || Sbjct 60897 CACAGATCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGA 60956 Query 153309 CTACCGGCAAACGTGCTATACGGCTCACTGTCAGAC-GCCAGTTTCAAACTGGCATCGAG 153367 || || || | || ||||| ||| ||| | || |||| ||||||| || | Sbjct 60957 CTTCCTTCATAAGTACTATAAA-CTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAA 61015 Query 153368 CGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCAC 153427 || | | || | ||||| | || |||| ||| ||| || || | || || | Sbjct 61016 TGCTCCGTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTC 61075 Query 153428 GTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGG 153487 || || ||||||| | ||||||| |||||| |||||||| | ||||| ||||| || Sbjct 61076 ATATGGAATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGG 61135 Query 153488 ACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAAT 153547 | || ||||| ||||| || ||||| || || || ||| | || || || || Sbjct 61136 TCTGTGTCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGAT 61195 Query 153548 TTTATTTAAACTAATCACGACATGT-TTCACCACAGAATGCAACAGTTGAAAATCAAACG 153606 |||||||| | | | ||| ||| || | ||| | ||||| | | | Sbjct 61196 TTTATTTAGATTCTGTGTTAT-TGTCTTCGTGACTTCTTTCAATTTTGTAAAATTATATG 61254 Query 153607 TTCCATT---AATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTT 153663 || || | | | | || | || | ||||| || |||||||| || || ||| || Sbjct 61255 TTTTATCTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTT 61314 Query 153664 CGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGC 153723 | || | | ||||| || ||||| | ||||||||| |||||||| || ||| Sbjct 61315 CATCTGCTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAA 61374 Query 153724 AATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGG 153783 ||| ||||||| ||||| | ||||| | || ||||| ||||||||||||||||| | Sbjct 61375 GATTTTTTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTG 61434 Query 153784 TTTCGGCTTG 153793 ||||| |||| Sbjct 61435 TTTCGACTTG 61444 >seq33159 Length=163697 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||||| | || ||||||| ||||| ||||||||||| || || ||| Sbjct 97475 GCCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGA 97416 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| ||||||||||| ||||| ||| |||| |||||||||||||| || || Sbjct 97415 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 97356 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| |||||| |||| | | || | ||||| | || |||| Sbjct 97355 AATGCCTTCCTTATC-TTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCA 97297 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || || | ||||| || || || ||||| Sbjct 97296 CCTCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || ||||||| |||||||| || || ||||| || || Sbjct 97018 CCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 96959 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | || || |||||||| || || |||||| | ||||| || || || Sbjct 96958 AGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 96899 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || ||| | | ||| | |||||| | ||||||||| Sbjct 96898 ATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 96839 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||||||||| || || || || || ||||| Sbjct 96838 TCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 96792 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || || |||| |||||||| || || ||||| || || Sbjct 98158 CCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 98099 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| ||||| || || || |||||| | ||||| || || || Sbjct 98098 AGTGTGCGTCCA-TCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 98040 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| ||| | | || | ||||| | |||||| || Sbjct 98039 AATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGAC 97980 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||||||||| || |||||| Sbjct 97979 TTCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCATA 97931 >seq21507 Length=372 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || || || || || | ||||| |||||| ||||||||||| Sbjct 218 GTAGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGGCCGTCTTCTAGCTGTTTACCC 159 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| | | ||||||||| || || || || || ||||| |||||| ||| Sbjct 158 GCAAAGATTAACCTTTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGGATTTTGGCTTTC 99 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | || |||| |||||| ||||| | || | |||||||| || | || Sbjct 98 ACATTTTCGATGGTATCGGAGGGCTCAACCTCTAGAGTGATGGTCTTGCCCGTGAGGGTC 39 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 38 TTGACGAAAATCTGCAT 22 >seq36087 Length=321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||||||||| || | || ||||| || || || || || || Sbjct 225 CCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 166 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || ||||||||||||||||| |||| || || ||||| || || || Sbjct 165 AGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 106 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| |||||| || | | ||| | ||||| | |||||||| Sbjct 105 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCACT 46 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 || | || | |||||||| || | |||||| || || || ||| Sbjct 45 TCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq27267 Length=86652 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 58287 GCCTCAATGTTGCCCAAATCGCCGACGTGTCGCACCGCAGCGTTAGGCGCGCCATGATTG 58346 ||||| |||||||| | ||||| ||||| ||||| | ||| | || || || || | Sbjct 7023 GCCTCGATGTTGCCGAGGTCGCCAACGTGGCGCACGGTGGCGGTGGGTGCACCGTGCTC- 6965 Query 58347 CTACCCGTAGGA-TTGAAATGTTCGCCGGCCGAAGTGCATCCGTTACTCATATCGCCAAA 58405 || | || || ||||| || ||||||| || ||||| ||||| | | ||||| || Sbjct 6964 CTGCTTGTTGGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTTGTATTGTCGCCGAA 6905 Query 58406 TTCGTGCACGTGAAAGCCGTG 58426 |||||||||||| |||||||| Sbjct 6904 TTCGTGCACGTGGAAGCCGTG 6884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495689037624000