Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq34861 601 5e-167 seq39759 116 5e-21 >seq34861 Length=230841 Score = 601 bits (666), Expect = 5e-167 Identities = 1201/1774 (68%), Gaps = 18/1774 (1%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| ||||| | | | || ||||| | || | || |||||||||||||| ||| Sbjct 60381 GTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAATACATTCCCGTTTTCAGA 60440 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | ||||| | || || || || || | ||| |||| |||| || || | | Sbjct 60441 CCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCATAATTCGGTTCAGCCACA 60500 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || || | ||||||||||||||| || || || || ||||| ||||||||||| || Sbjct 60501 TGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTGTCAGCAGCCATTTTAATT 60560 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA-- 78955 | || || | ||||||||||| ||||||||| | | | ||||||| | ||||| Sbjct 60561 GTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGTCTAATATCCTTTGGAATC 60620 Query 78956 -GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 | | |||| ||||| || ||| | || ||| |||||| || ||||||| | Sbjct 60621 CGCTCAATATTTTGAATAGAACCATTGTTATGAATTATCTGATTCTTCATGTCTTCATCC 60680 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 |||| | | || || || ||| | | ||| | || || ||||||||||||||| Sbjct 60681 CATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTTACAACTTGAAATTCTCCA 60740 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 || || || | | |||||| || ||| ||||||| | ||||||||||||||| Sbjct 60741 GATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAATGATTCATTATTTCCC 60800 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 || ||||| || || |||||||| ||||| || || | || | ||| | ||| || Sbjct 60801 AAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAAAGTGAATTGCGAAGTCCA 60860 Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 ||| ||||| || |||| | ||| ||||| ||||||| || || | Sbjct 60861 TATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCACAGATCAGTTGGAGTTTTATCC 60920 Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGT 79314 || | ||||||||| | || || | || || |||| || || |||| | Sbjct 60921 CACATATCATATTGCAAGATGCCCTGGCTTGCCGGACTTCCTTCATAAGTACTATAAACT 60980 Query 79315 CCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAA 79374 || | ||||| || | ||| ||||| || |||||||||||||| || || ||||| || Sbjct 60981 CCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCCGTAGTATATTGTTTCAAAG 61040 Query 79375 ATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAAC 79434 || | | || || | ||| ||| || ||| ||||| | || | ||| Sbjct 61041 ATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATATGGAATGCGCATAAGTACAAAT 61100 Query 79435 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCA 79494 | || ||||| ||||| || |||||||| || ||||| |||| | | |||||| | | Sbjct 61101 GTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTGTGTCGCATGTTAGAATTCTTT 61160 Query 79495 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACT 79554 |||||||| | || || || |||| ||| || |||||||| |||||| |||| Sbjct 61161 GCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTTATTTAGATTCTGTGTTATTGTC 61220 Query 79555 TTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT--ATTA-CAAACATGTTC 79611 || || || || | ||| ||||| | || | |||| |||| |||| | || Sbjct 61221 TTCGTGACTTCTTTCAATTTTGTAAAATTATATGTTTTATCTTCATTAACAAATCTATTT 61280 Query 79612 AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATT 79671 ||||| | || |||| ||||| || || || |||| || | ||||| | ||| Sbjct 61281 AACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATCTGCTGAAGTATATTCAACAATT 61340 Query 79672 TCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 79731 ||||| || | ||||| || |||||||| || | ||||| ||||||||| ||| | ||| Sbjct 61341 TCAGTACACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGATTACTTTTTCTATTA 61400 Query 79732 CACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 79791 || | ||| || || || ||| | || || || ||||| | || | ||||| || || Sbjct 61401 CATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCGACTTGTGCCTCTATTATTGCC 61460 Query 79792 TTCCAGACGACTCGAGC-----CTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATT 79846 ||||| | || |||| ||| ||| || | |||||||| |||||||| Sbjct 61461 TTCCACAGTTCTTGAGCTCGAACTTGCTTAACGA-----ACCTCTTTTCCTGTTCGTATT 61515 Query 79847 GTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAG 79906 | ||||||| ||| || || ||||||||| ||| | | ||||| || |||| || Sbjct 61516 TTTCATATAATGTTTCAAATTCTTCTCCCCAACAGTCGGCAAGACCAGGGCAATCGTGAG 61575 Query 79907 GACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCC 79966 | ||||| || |||| | |||| | | || || |||||||| | ||||||||||| Sbjct 61576 GGCACATTAAACTCCACATTTCATCTTTTTCAACACGGTTCATAAATAAATCAGGAATCC 61635 Query 79967 AAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGAT 80026 | | ||| ||||| ||||| | ||| ||| || || || ||||||||||| |||| Sbjct 61636 ATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCTTTACCAGTATTCTTTTTCAGAT 61695 Query 80027 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTC 80086 | | ||| | | || |||||||||||| ||||| ||||| || || | | | || |||| Sbjct 61696 CTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAGTAAATTGCGAAAGCCCCTGGTC 61755 Query 80087 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 80146 |||| || ||||| || || | || ||||| || ||||| || |||||||||||||| | Sbjct 61756 GTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTATTGTACACTCTCAACATTGGTA 61815 Query 80147 TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTAC 80206 || ||||||||| || || || || | || ||| | || | | | ||| | Sbjct 61816 CAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAGGTACCTTTTGATCTGATACAAT 61875 Query 80207 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 || || || || || || || ||| || |||||||| ||| ||||||| || | Sbjct 61876 GAACATGTACTCCAATACCACCAGCTGATTTGGAAATTAATGCACATTGTTTTAATGTGT 61935 Query 80267 CATAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGG 80325 |||| || || || ||||||||||| ||| || || | || || || ||| | ||| Sbjct 61936 CATATATACCTTCAATGCTATCATCTTTCATTGCTATG-AGGAAGCAAGAAGATAATTGC 61994 Query 80326 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 80385 | | |||| | ||| || || || ||| || || || || ||||||| ||| Sbjct 61995 GGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGCATGAGTGAAATATTTTTCCGAC 62054 Query 80386 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACA 80445 | | ||||| || || || |||| || || || ||| || || | | ||| Sbjct 62055 AACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTCACCATGGATCCCGATAGAGACT 62114 Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCT 80479 ||||||| ||| ||||| ||||||||| | |||| Sbjct 62115 CGCATTAGCATATGCTGTGGTCTTTCAGCAATCT 62148 Score = 113 bits (124), Expect = 6e-20 Identities = 121/159 (76%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 80682 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGC 80741 |||| |||| || ||||| ||||||| ||| |||| |||| ||| || ||||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 80742 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 80801 |||||| || || | |||||| ||||||||| | || || || | | |||||||||| Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 80802 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 || |||||||||||| || ||||| | |||||| || Sbjct 64214 CACAGTTGTTACTCCAGAGTAAATTCCATTGATAACTTT 64252 >seq39759 Length=128263 Score = 116 bits (128), Expect = 5e-21 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||| |||||| || ||| || || || |||||||| | ||| ||||| | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| ||||| || ||||| || |||||||||||||||||||| || ||||||| Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 50102 CAACAAGTCTCTCTCCATAACTGGC-GCTGTCATG--TATCCACTTTTGAGCCCAATCGG 50158 |||| | | || ||| | | || | | | || ||||| | | ||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||| || |||||||| || | ||||| || ||||| || Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 50229 ATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGA 50286 ||||||||| |||| || || || ||| || || || | || || || || || || Sbjct 66885 ATAAGTATCAATCAGCAATGAGTA--CATCTCTGAGTGTACATTCTCCATAGCAATTTGG 66828 Query 50287 AATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAA 50346 ||||| || || | || || || ||| || |||||| |||||||||| | || Sbjct 66827 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAG 66768 Query 50347 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 |||||||| ||||| || ||| || |||||||| |||||||||||||| ||||| || Sbjct 66767 TTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAAGTG 66709 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| ||| ||||| ||||||||||| ||||| || || || ||||| ||||| | | Sbjct 66150 TTGGATAAATCCACTTCCTCCACTGTCCAGAATGAAGCTTCAGCTTTTTTGTACATTTGC 66091 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||||| ||| |||||||||| ||||| || || || Sbjct 66090 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 66056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717725878570800