Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq39759 143 3e-29 seq22323 98.7 1e-15 >seq39759 Length=128263 Score = 143 bits (158), Expect = 3e-29 Identities = 166/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || || |||||||| || || ||||| || ||||||| || |||||||| || || Sbjct 66887 ATATAAGTATCAATCAGCAATGAGTACATCTCTGAGTGTACATTCTCCATAGCAATTTGG 66828 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCA--TTGTACTTCCGAGTAAAATCTTTCGGCCA 14259 || ||||||||| | || ||||| |||| ||| ||||| |||||| ||| ||| Sbjct 66827 AATCCATAAAAGAACCTTGCTTC--ACCAATTTGAACTTCTTGTGAAAATCGTTCCACCA 66770 Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14319 | ||||||||||||||||||||| ||| |||||||||||||||| | ||||||||||| Sbjct 66769 AGTTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAAGT 66710 Query 14320 ATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCT 14361 ||| | || | ||| |||||| |||||||||| Sbjct 66709 GCCTCTCACAGTCTTTCAAACTTTCCCAATCTGATAAATCCT 66668 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 ||||||||||| ||| || || || ||||| || | || |||||||| || || || Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAA--GTCAGACCGGGCATCAAGCCCCGCTT 67277 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || ||||| ||||||| ||||| ||||||||||| ||||| || || || ||||| Sbjct 67276 CTTCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAA 67217 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 || | || ||||| ||||| ||| |||| | ||||||| ||||| || Sbjct 67216 GGCAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTC 67157 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | ||||| || | | | | |||||||| ||||| ||||| Sbjct 67156 TGCCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAATAA 67112 >seq22323 Length=191951 Score = 98.7 bits (108), Expect = 1e-15 Identities = 248/381 (65%), Gaps = 0/381 (0%) Strand=Plus/Minus Query 120593 GAAATAAAGTACGATGGTGAACGAATTCAAATTCATAAAGACAATAATTTATATAAATAT 120652 |||||||| || ||||||||||| | ||| |||||||| | | || |||||| Sbjct 187021 GAAATAAAATATGATGGTGAACGGGTGCAAGTTCATAAAAAAGGTTCAGAATTTAAATAC 186962 Query 120653 TTTAGTAGAAATCTAAAACCAGTTTTATTTCATAAAATAGAGGGATTTGATGAGTTTCTA 120712 ||| | || |||| |||||| | || ||| | | ||| | |||| |||| Sbjct 186961 TTTTCTCGAGCCTTAAAGCCAGTTATGGCCCACAAAGTCAATCATTTTAAGGAGTATCTA 186902 Query 120713 ACCAGCGCTTTCCCTTCAGCTAATAACTTTATTTTAGATGCTGAATTAATATTAATTGAT 120772 | | || |||||| | | |||| || ||||| | || | |||| | ||| Sbjct 186901 CCTAAAGCATTCCCTAAGGGAGTTGACTTAATATTAGACACAGAGGTTTTATTGGTGGAT 186842 Query 120773 TTGAATACTAACAGATTTGTACCTTTTGGTTCATTAGGTATAAATANNNNNNNNNNNTTT 120832 ||||||| | | | |||| |||||| |||| |||||| ||| || Sbjct 186841 GTGAATACAGGGAAACCTTTACCATTTGGTACATTGGGTATACATAAACAGTCTGCATTC 186782 Query 120833 AAAAACTCTAGCACTTGTTTATTTGTCTTTGATTGTCTATTTTACAATAATGTAAGTTTA 120892 ||| | || |||| | | ||| |||||||| || | ||||||| | | ||| Sbjct 186781 AAAGATGCTGAAGTTTGTCTTTATGTGTTTGATTGCCTTTATTACAATGGAGATATTTTG 186722 Query 120893 ATGAGTCTGCCATTTGTTAATAGGAGAAAAATTATTGTTGATAATATCAATGAAATAAAA 120952 ||| | ||||| |||| || |||||| ||||| || ||||||| || |||| | ||| Sbjct 186721 ATGGATTTGCCAATTGTAAAAAGGAGACAAATTCTTCTTGATAACATGGTTGAAGTTAAA 186662 Query 120953 AATAAGGTTATGGTCTCAGAA 120973 ||| | |||||| | || ||| Sbjct 186661 AATCATGTTATGTTTTCTGAA 186641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479365385598000