Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq33159 93.3 3e-14 seq27463 91.5 1e-13 >seq33159 Length=163697 Score = 93.3 bits (102), Expect = 3e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| || | || |||||| || | ||||| || || Sbjct 97018 CCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 96959 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||| ||||||||||| || ||||| | ||| || || | || Sbjct 96958 AGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 96899 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| |||| || | ||| |||||| || ||| || Sbjct 96898 ATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 96839 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTA 43122 || | || ||||| || ||||| | || ||||||||||| ||||| || | | | | | Sbjct 96838 TCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATCTTGTGATTGTAA 96779 Query 43123 TTTGTACAC 43131 | |||| || Sbjct 96778 TCTGTAAAC 96770 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| || |||||||||||| | || ||||| |||||||||||||| Sbjct 97210 TCCTTCTGGATATTGTAGTCTGACAATGTACGTCCATCCTCCAACTGTTTGCCGGCAAAG 97151 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | ||| || || | || | ||||| || || |||| | | || || | Sbjct 97150 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATCTTCGCCTTAACATTT 97091 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||||| | || || || | || || || || || || | ||||| || Sbjct 97090 TCAATTGTGTCGGAGGGTTCAACTTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACG 97031 Query 43099 AAAATTTGCAT 43109 ||||| ||||| Sbjct 97030 AAAATCTGCAT 97020 >seq27463 Length=372575 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || || || ||||| || | || ||||| || | ||||| || ||| Sbjct 145639 CCTCCTCGAAGCCTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 145698 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || ||||| ||||||||||| || ||||||| || ||||| | || Sbjct 145699 AAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 145758 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || | |||| || | | | ||||| || || || Sbjct 145759 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACC 145818 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| |||||| ||||| || || || ||||| || || || |||||| Sbjct 145819 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCATT 145866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381088538947260