Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq34861 511 6e-140 seq39759 116 5e-21 >seq34861 Length=230841 Score = 511 bits (566), Expect = 6e-140 Identities = 1155/1733 (67%), Gaps = 14/1733 (1%) Strand=Plus/Plus Query 70840 TAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 70899 || ||||| || ||||| ||||| | ||||| | ||||| || || || | ||| Sbjct 60420 TAATACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTG 60479 Query 70900 GAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCC 70959 ||| | || || || | ||||| || | || ||||||||||| || || || || Sbjct 60480 CCATAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCT 60539 Query 70960 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT 71019 ||||| ||||||||||| || | || || | ||||||||||| ||||||||| | | Sbjct 60540 CTGTCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAAT 60599 Query 71020 CGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCAATAATC 71076 | ||||||| | ||||| | | |||| ||||| || ||| | ||| ||| Sbjct 60600 TGTCTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGAACCATTGTTATGAATTATC 60659 Query 71077 CTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGA 71136 ||| || || ||||||| ||||| | | || || || ||| | | |||| | Sbjct 60660 TGATTCTTCATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGG 60719 Query 71137 TTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGT 71196 || || ||||||||||||||||| || || | | |||||| || ||| | ||| Sbjct 60720 TTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGT 60779 Query 71197 TCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 71256 || | ||| |||||||||||||| ||||| || || ||||| || ||||| || || | Sbjct 60780 TCAAATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAAT 60839 Query 71257 AATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCC 71314 || || ||| | ||| |||| | | || ||||| || |||| | ||| | || Sbjct 60840 AAAAGTGAATTGCGAAGTCCATAT--TTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCC 60897 Query 71315 AAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATG 71374 | ||||| | ||| ||||| | || || Sbjct 60898 ACAGATCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGAC 60957 Query 71375 ATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATG 71434 |||| |||| ||| || ||| | |||||| || ||||| ||||| || ||||||| Sbjct 60958 TTCCTTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATG 61017 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAA 71494 |||| || || || ||||| || || | | || || | ||| || || ||| Sbjct 61018 CTCCGTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCAT 61077 Query 71495 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 ||||| | || | ||| | || ||||| ||||| || |||||||| || |||| Sbjct 61078 ATGGAATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTC 61137 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 71614 |||||| | | |||||| | | |||||||| | || || || |||| ||| || |||| Sbjct 61138 TGTGTCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTT 61197 Query 71615 TATTGAGATTTCTGACT-ATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC 71673 |||| ||||| ||| | ||| || || || || | ||| ||||| | || | Sbjct 61198 TATTTAGATT-CTGTGTTATTGTCTTCGTGACTTCTTTCAATTTTGTAAAATTATATGTT 61256 Query 71674 CCATCT--ATTA-CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 |||| |||| |||| || || |||| || |||| ||||| || || || ||| Sbjct 61257 TTATCTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCA 61316 Query 71731 TTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | || | ||||| | ||||||||| || | |||||| || || ||||| || | | Sbjct 61317 TCTGCTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGA 61376 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 |||| ||||||||| ||| | ||||| | ||| || || || || | || || || ||| Sbjct 61377 TTTTTTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTT 61436 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTAT 71910 || | || | ||||| || || ||||| | || |||| | | || | | Sbjct 61437 TCGACTTGTGCCTCTATTATTGCCTTCCACAGTTCTTGAGCTCGAACTTGCTTAACGAAC 61496 Query 71911 CTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT 71970 |||||||| |||||||| | ||||||| ||| || || ||||||||| | | | Sbjct 61497 CTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACAGTCGGCA 61556 Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 | ||||| || || | || ||||| || |||| | |||| | | || || ||| Sbjct 61557 AGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGGTTC 61616 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 72090 ||||| | |||||||||||| | ||| ||||| ||||| | ||| ||| || || Sbjct 61617 ATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCTTTA 61676 Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150 || ||||||||||| ||||| | ||| | | || |||||||||||| ||||| ||||| Sbjct 61677 CCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAGTAA 61736 Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210 || || | | | || || ||||| || ||||| || || | || ||||| || ||||| Sbjct 61737 ATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTATTG 61796 Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 || |||||||||||||| | || ||||||||| | || || || || | || ||| | Sbjct 61797 TACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAGGTA 61856 Query 72271 CCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 || | | | ||| || || || || || || || ||| || |||||| Sbjct 61857 CCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAATTAAT 61916 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAG 72389 || ||| ||||||| || ||||| || || || || |||||||| ||| || || | || Sbjct 61917 GCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTATG-AG 61975 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || || ||| | ||| | | |||| | ||| || || || ||| || || Sbjct 61976 GAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGCATG 62035 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 || || ||||||| |||| | ||||| || || || |||| || || || Sbjct 62036 AGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTCACC 62095 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 ||| || || | | ||| ||||||| ||||||||| ||||||||| | |||| Sbjct 62096 ATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCAGCAATCT 62148 Score = 107 bits (118), Expect = 3e-18 Identities = 120/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 72765 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 72824 |||| |||| || ||||| ||||||| ||| |||| |||| ||| || |||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 72825 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884 |||||| || || | |||||| ||||||||| | || || || | | |||||||||| Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 72885 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 || |||||||||||| || ||||| | |||||| || Sbjct 64214 CACAGTTGTTACTCCAGAGTAAATTCCATTGATAACTTT 64252 >seq39759 Length=128263 Score = 116 bits (128), Expect = 5e-21 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||| ||||| || ||| || || || |||||||| | ||| ||||| | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| ||||| || ||||| ||| |||||||||||||||||||| || ||||||| Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCA-TG--TATCCACTTTTGAGCCCAATCGG 42263 ||| | | || ||| | ||| | | | || ||||| | | ||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||| || |||||||| || | ||||| || ||||| || Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 42334 ATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGA 42391 ||| ||||| |||| || || || ||| ||||| || | || || || || || || Sbjct 66885 ATAAGTATCAATCAGCAATGAGTA--CATCTCTGAGTGTACATTCTCCATAGCAATTTGG 66828 Query 42392 AATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAA 42451 ||||| || || | || || || || || |||||| |||||||||| | || Sbjct 66827 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAG 66768 Query 42452 TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 ||||| || ||||| || ||| || |||||||| |||||||||||||| ||||| Sbjct 66767 TTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670631902657200