Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq55175 201 1e-46 seq33159 132 5e-26 >seq55175 Length=171662 Score = 201 bits (222), Expect = 1e-46 Identities = 772/1193 (65%), Gaps = 36/1193 (3%) Strand=Plus/Minus Query 18730 TTGATAGCATTTAAAAGGTCGCCATTGTCCGCGTCGATCTCCCACGCAAACACTCCCGCC 18789 || ||||| ||||| || ||||||||||| || |||||||||||||| || | || || Sbjct 40264 TTCATAGCGTTTAACAGTTCGCCATTGTCTGCATCGATCTCCCACGCGAATAGACCGCCC 40205 Query 18790 AACTCGTGGTCTAACACGTATTTTGTTTTATCGGCGACTGATTTTGGATCGTCGTACGAC 18849 | | | || | ||| || || ||| || ||| |||| |||||||| Sbjct 40204 AGTTTATTGTTTCTCACATACTTGCCTTTCTCAATAGTCGATCGCGGATTGTCGTACGTT 40145 Query 18850 ACAAGATTGCCGTCCGATTTGCGATACGCGAATGCCGCTTTGGCCACTTCGTCGTAAGTG 18909 | || | ||| |||| | || | ||| |||| || || | ||||||| | Sbjct 40144 ATTAGGTCACCGGTCGATGGCCTGAACACATATGGGGCTTCTGCAACGTTGTCGTAATGG 40085 Query 18910 TAATCGTATGAGGTCA----AATTG--TGCACGATCTGCCGGTAATCGACCACACCGTTT 18963 | || || | || |||| | | || | || |||||| || ||||| | Sbjct 40084 AACTCCCATTTGCCCATAGCAATTTCATTTGCTATTTCCCTGTAATCAACAACACCATCC 40025 Query 18964 TCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCAAATGGATTATCACTATCG--- 19020 | ||| || || || || || ||||| |||| | |||||||| | || || Sbjct 40024 TGCCATGTACCTTTTACTGGTCCTGTGGCGTTGCCAGTGAATGGATTGTTACCTTCATAA 39965 Query 19021 CTCTTTACCCCAGTCCAACCGCGCCCGTACATTGCTACACCCAGTGCAATTTTGCTTGTC 19080 | | ||| |||||||| ||||| |||||||| |||||||| | |||| || ||| Sbjct 39964 CCGTGTACACCAGTCCAGCCGCGTCCGTACATAGCTACACCTACCACAATCTT-CTTAGG 39906 Query 19081 GGT-ACGTGTTGCGCAAGCAACGCCTCTACGGCACGATCCGCGCAATAAGGTTCGTCGGG 19139 | | || ||| ||||| || | || || ||| | | ||||| ||| | ||| Sbjct 39905 GTTCACACCTTGAGCAAGTAAATATTTAACACCAAAATCAGTGGTATAAGTTTCTTTGGG 39846 Query 19140 TTTCCATGCAGGTGCAAACAAAGCGGTTTGATGTCCTAAATCCGTCATAG-ACCAGGCTC 19198 ||||||||||| ||| | | | || ||||| || | ||| | | ||||||| | Sbjct 39845 ATTCCATGCAGGGGCATATAGGGGAGTCTGATGACCGAGGGT-GTCGTTGGACCAGGCAC 39787 Query 19199 CTTTAAAATCGTACGACATTAAAAATATGGTGTCGAGGTATTTTTGCGCTTCAGTGTAAT 19258 |||| || ||||| ||| | || ||| ||| | || ||||| ||||| |||||| Sbjct 39786 CTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTGGGCTTCGCTGTAAT 39727 Query 19259 AGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCACTCGTCAACAGATAGT----AA 19314 || || ||||||||| || || || || || || | | || | | Sbjct 39726 CTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAGCTCGTATTTCTTAC 39667 Query 19315 CGATTGTGATGTACGCCTAGGGCGTCGAGCATGCCGCGAAGTTCACGCAGCAGG--ATCG 19372 | || | | || || ||| | ||| |||| | || || || | | Sbjct 39666 CCGTT----TCTTCGGAAAGCTCGTTTAACATTTCGCGCAACTCCTTCATTAGTTCAACA 39611 Query 19373 TGTACGTGGCCCGATCGCGTTCGGCGTCGCCGACGTTGGGGTTCGCGCCATTGCCGCCTG 19432 | || | || ||| ||||| | || | || |||||| || || || ||||| | Sbjct 39610 TAAACTTCTCC--ATCT--TTCGGGCTA-CCAAGGTCGGGGTTAGCTCCCTTACCGCCAG 39556 Query 19433 GAAACTCCCAATCGATATCGACGCCATCGAAGAATTTCCACGTTTCTAGATACTCTTGGA 19492 | || ||||||||||| || || ||||||||||| ||||| |||| || | |||| | Sbjct 39555 GGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAAGGAAATCTTTCA 39496 Query 19493 CCGAATCGATAAACGTCTGCCG-TACGCTCTTGTC-GTGCATATGGTAAAATGGGTCCGA 19550 | ||||| | || | ||| | | || ||||| ||| | | | ||| || || | Sbjct 39495 CAGAATCAACGAAGCGGTCCCGCTTCACT-TTGTCAGTGAAAAAGAAGAAA-GGATCAGC 39438 Query 19551 AAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATGAGGGTTCGCCAATTTGGCTGC 19610 ||| ||||||||||| || |||||||| | ||| || | || | || ||| | Sbjct 39437 AAGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGTTTAAGGGA 39378 Query 19611 CATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATGCGCTGACA--CCTTTTTGG 19668 ||| || || ||||| ||||||||||| ||||| ||||| | |||| || || || Sbjct 39377 CATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAA--GACAAGCCCTTCTGT 39320 Query 19669 GGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTTTGAAGTCGGCACGACCGGCA 19728 || || || | || ||||||||||||||||||| || ||||| || |||| || Sbjct 39319 GGCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCACGGCCACTG 39260 Query 19729 CACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTTTGAGGGCATCATTGATGCCG 19788 || ||||| || | |||| |||||||| || || | ||||||||||| Sbjct 39259 CATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTTAAACTGTCATTGATGCCA 39200 Query 19789 TCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCGACAAGTTCGGTGTGGGCACT 19848 ||||| || || || || | ||||| ||||| | ||| | || || || | || | Sbjct 39199 TCGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGATTAGGAATTGGTATA 39140 Query 19849 TTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGACAAAGTATGCACC 19901 |||||| || || | ||| || || ||||||||||| || ||||| || || Sbjct 39139 CGATCGACTGGGAATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAGCTCC 39087 >seq33159 Length=163697 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| ||||| | || || |||| ||||||||||||||| || ||||| ||| Sbjct 97475 GCCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGA 97416 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| |||||||| || ||||| ||| |||| |||||||||||||| || || Sbjct 97415 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 97356 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || ||||||| ||| | | || | ||||| | ||||| || Sbjct 97355 AATGCCTTCCTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCAC 97296 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | |||||| || || || ||||| Sbjct 97295 CTCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| ||||| || || || |||||||| || Sbjct 98158 CCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 98099 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| || || || || || |||||| | ||||| || || || Sbjct 98098 AGTGTGCGTCCA-TCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 98040 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| ||||| ||| | | || | ||||||| ||| || || Sbjct 98039 AATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGAC 97980 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || ||||| ||||||||||| || |||||| Sbjct 97979 TTCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCATA 97931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506631160490400